RetrogeneDB ID: retro_tgut_8

Retrocopy location

• Organism: Zebrafinch (Taeniopygia guttata)
• Coordinates: Un:153154756..153155683(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTGUG00000015228
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTGUG00000014764
• Aliases: None
• Description: None

Sequence

>retro_tgut_8
CAGCCACATGAAATGTCCAACAGCAGCTCCATCAGCCACTTCCTCCTGCTGGCACTGGCAGACACGCGGCAGCTGCAGCT
CCTGCACTTCTGCCTCTTCCTGGGCATCTCCCTGGCTGCCCTCCTGGGCAACGGCCTCATCATCAGCGCCGTAGCCTGCG
GCCACCACCTGCACACGCCCATGTTCTTCTTCCTGCTCAACCTGGCCCTCAGCGACCTGGGCTCCATCTGCACCACTGTC
CCCAAAGCCATGCACAATTCCCTCTGGGACACCAGGAACATCTCCTACACAGGATGTGCTGCTCAGCTCTTTTTCTTTAT
GTTCTTCATTGGAGCAGAGATTTCCATCCTGACCATCATGAGCTATGACCGCTACGTGTCCATCTGCAAACCCCTGCACT
ACGGGACCCTCCTGGGCAGCAGAGCTTGTGCCCACATGGCAGCAGCTGCCTGGGCCAGTGCCTTTCTCAATGCTCTGCTC
CACACAGCCAGTACATTTTCCCTGCCCCTGTGCCATGGCAATGCCCTGGGACAGTTCTTCTGTGAAATCCCACAGATCCT
CAAACTCTCCTGCTCCAAATCCTATCTCAAGGAACTTGGGCTCATTGCTGTTAGTGCCTGTTTGGTATTAGGATGTTTTG
TGTTCATTATTTTCTCCTATGTGCAGATCTTCAGGGCTGTGCTGAGGATCCCCTCTGAGCAGGGACAGCACAAAGCCTTT
TCCACCTGCCTCCCTCACCTGGCCGTGGTCTCTCTGTTCATCAGTACTGCTATATTTTACTATCTGAAGCCTCCCTCCAT
GTTCTCCCCATCCCTGGATCTGGCCCTGTCAGTTCTGTACTCGGTGGTGCCTTCAGCCCTGAACCCCCTCATCTACAGCC
TGAGGAACCAGGAGCTCAAGGCTGCAGTGTGGAGACTCATGACTGGG

Alignment

ORF - retro_tgut_8 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.72 %
• Parental protein coverage: 99.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QMSNSSSISHFLLLALADTRQLQLLHFCLFLGISLAALLGNGLIISATMSTCHHLHTPMFFFLLNLALSD
          .MSNSSSISHFLLLALADTRQLQLLHFCLFLGISLAALLGNGLIISA.....HHLHTPMFFFLLNLALSD
Retrocopy EMSNSSSISHFLLLALADTRQLQLLHFCLFLGISLAALLGNGLIISA-VACGHHLHTPMFFFLLNLALSD

Parental  LGSICTTVLKAMHNSLWDTRNISYTGCAAQLFFFMFFIGAEISILTIMSYDRYVSICKPLHYGTLLGSRA
          LGSICTTV.KAMHNSLWDTRNISYTGCAAQLFFFMFFIGAEISILTIMSYDRYVSICKPLHYGTLLGSRA
Retrocopy LGSICTTVPKAMHNSLWDTRNISYTGCAAQLFFFMFFIGAEISILTIMSYDRYVSICKPLHYGTLLGSRA

Parental  CAHMAAAAWASAFLNALLHTASTFSLPLCHGNALGQFFCEIPQILKLSCSKSYLKELGLIAVSACLVLGC
          CAHMAAAAWASAFLNALLHTASTFSLPLCHGNALGQFFCEIPQILKLSCSKSYLKELGLIAVSACLVLGC
Retrocopy CAHMAAAAWASAFLNALLHTASTFSLPLCHGNALGQFFCEIPQILKLSCSKSYLKELGLIAVSACLVLGC

Parental  FVFIIFSYVQIFRAVLRIPSEQGQHKAFSTCLPHLAVVSLFISTAIFYYLKPPSMFSPSLDLALSVLYSV
          FVFIIFSYVQIFRAVLRIPSEQGQHKAFSTCLPHLAVVSLFISTAIFYYLKPPSMFSPSLDLALSVLYSV
Retrocopy FVFIIFSYVQIFRAVLRIPSEQGQHKAFSTCLPHLAVVSLFISTAIFYYLKPPSMFSPSLDLALSVLYSV

Parental  VPSALNPLIYSLRNQELKAAVWRLMTG
          VPSALNPLIYSLRNQELKAAVWRLMTG
Retrocopy VPSALNPLIYSLRNQELKAAVWRLMTG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Taeniopygia guttata was not studied using RNA-Seq expression data.

ChIP-Seq

Taeniopygia guttata was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tgut_8 retrocopy.

TSS

Taeniopygia guttata was not studied using FANTOM5 data.

Lab

retro_tgut_8 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_tgut_8 has 0 orthologous retrocopies within neognath group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Taeniopygia guttata	ENSTGUG00000014764	1 retrocopy	retro_tgut_8 ,