RetrogeneDB ID: | retro_tnig_11 | ||
Retrocopylocation | Organism: | Tetraodon (Tetraodon nigroviridis) | |
Coordinates: | 5:12745311..12745815(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTNIG00000000903 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ube2g1a (2 of 3) | ||
Ensembl ID: | ENSTNIG00000008566 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065] |
Percent Identity: | 84.52 % |
Parental protein coverage: | 99.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTEPRSALLLRRQLTELNKSPVDGFSAGLIKDNDLYRWEVMIIGPPDTLYEGGGVFKAHLTFPKDYPLRP |
M.EPRSALLL.RQLTELNK.P..GFSAGLI.DNDLY.WEVMIIGPPDTLYEGG..FKAHLTFP.DYPL.P | |
Retrocopy | MMEPRSALLLKRQLTELNKCPSEGFSAGLINDNDLYKWEVMIIGPPDTLYEGG-MFKAHLTFPRDYPLKP |
Parental | PKMKFITDIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV |
PKMKFIT.IWHPN...NGDVCISILHEPGED.YGYEKPEERWLP.HTVETI.ISVISMLADPN.DSPAN. | |
Retrocopy | PKMKFITKIWHPNINTNGDVCISILHEPGEDVYGYEKPEERWLPVHTVETILISVISMLADPNTDSPANL |
Parental | DAAKEWREDRDGEFKRKVARCVRKSQDD |
.AAKEW.EDRDGEFK.KVARCVR.SQ.. | |
Retrocopy | PAAKEWKEDRDGEFKKKVARCVRRSQEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014433 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011801 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000009498 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009769 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002118 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000248 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008795 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010041 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002399 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006117 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000008566 | 1 retrocopy |
retro_tnig_11 ,
|
Takifugu rubripes | ENSTRUG00000005995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000595 | 1 retrocopy | |
Drosophila melanogaster | FBgn0058045 | 1 retrocopy |