RetrogeneDB ID: | retro_tnig_25 | ||
Retrocopy location | Organism: | Tetraodon (Tetraodon nigroviridis) | |
| Coordinates: | 13:7660062..7661154(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | gcnt3 | ||
| Ensembl ID: | ENSTNIG00000015814 | ||
| Aliases: | None | ||
| Description: | glucosaminyl (N-acetyl) transferase 3, mucin type [Source:ZFIN;Acc:ZDB-GENE-110411-253] |
Retrocopy-Parental alignment summary:
>retro_tnig_25
TGCCTGGCCATCATCGACGGGGACGTCGAGGGGAGGGAGAGGGACCTGGAACTTCTGCTGGCATCCAGGGCGAGACGGGA
TGTGTGGAACGAGACTTTCTTCATGAACGCGACGGCCGACTGCGCGTCCTACGTGGAGAGCCGAGGGTACATCACGGAGC
CCCTGAGCGAGGAGGAGAGGAACTTCCCCATCGCGTACTCCATGGTGATCCACGAGAAGATCGAGATGTTCGAGCGGCTC
CTGCGGGCCATCTACACCCCGCAGAACATCTACTGCGTCCACGTCGACCAGAAATCCCAGGATGAGTTCAAGGCGGCCGT
GGGGGCCATCGTGTCCTGCCTCCCCAACGTGTTCCTGGCCACCAAGATGGAGAGCGTGGTCTACGCGTCGTGGTCCCGCG
TCCAGGCGGACCTGAACTGCATGAGAGACCTGCTGGACTCCCAGGTCCAGTGGAAGTACCTGCTGAACACATGCGGGAGC
GACTTCCCCATCAAAACCAACCGGGAGATGGTGCAGACGCTGCAGACCCTGAGGGGCAGCAACAGCATGGAGTCGGAGAC
CACCAACGACTACAAGAAGGGCCGCTGGCAGTACCACCACCGGGTCACGGATCAGGTCGTCCGGACCGACGCGACCAAGG
GCCCCCCGCCCATAAACACCCCCATGTTCTCCGGGAACGCCTACTTCGTGGTGTCCAGGGCGTTTGTGCACCACGCGTTG
ACGGACGCGGAGGTGCAGGCGCTCCTGGAGTGGGAGAAGGACACCTTCAGCCCGGACGAGCACCTGTGGGCCACCCTGCA
GAGGATGCCCCGGGTCCCGGGGTCGGTGCCCCCCAACGACAAGTACGACACGTCGGACATGCTGGCCCTGGCGCGCGTGG
TCAAGTGGGGCTACTTAGCGGGGGACGTGGAGCAGGGGGCCCCGTACCGACCCTGCACCGGGGACTACAGGAGATCCGTG
TGCGTGTACGGAGCAGGGGACGTCCGGTGGCTCCTCGCACAAAGACACCTGTTGGCCAACAAGTTCGATCCTGAGATCGA
TGACGTCGCCATCAGGTGTCTGGAGTCGTATCTGCGCATGAAGGCTTTAAGT
ORF - retro_tnig_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.04 % |
| Parental protein coverage: | 85.35 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | CSAVLQGDQEEIEKAKILAITEAFQKSVQIPDEYYLSATENCRSFKIMRKYLQFPLSQEEKEFPLAYSMV |
| C.A...GD.E..E....L.........V.........AT..C.S....R.Y...PLS.EE..FP.AYSMV | |
| Retrocopy | CLAIIDGDVEGRERDLELLLASRARRDVW-NETFFMNATADCASYVESRGYITEPLSEEERNFPIAYSMV |
| Parental | VHHKVQNFERLLRTIYAPQNIYCVHVDQKSTPSFRAAVTAIVSCFPNVFMVSQPVSVVYASWSRVQADIN |
| .H.K...FERLLR.IY.PQNIYCVHVDQKS...F.AAV.AIVSC.PNVF......SVVYASWSRVQAD.N | |
| Retrocopy | IHEKIEMFERLLRAIYTPQNIYCVHVDQKSQDEFKAAVGAIVSCLPNVFLATKMESVVYASWSRVQADLN |
| Parental | CMADLYNSSINWKYFINVCGQDFPLKTNWEIVQMLRLLRGSNSMESEKMPEGKKWRVTKVHEVVDGAIQG |
| CM.DL..S...WKY..N.CG.DFP.KTN.E.VQ.L..LRGSNSMESE.....KK.R....H.V.D..... | |
| Retrocopy | CMRDLLDSQVQWKYLLNTCGSDFPIKTNREMVQTLQTLRGSNSMESETTNDYKKGRWQYHHRVTDQVVR- |
| Parental | TEKHKEAPPFNLPILSGNAYIVVSRGYIRSVLEDKRIQVLIEWAKDTYSPDEFLWATIQRMPGVPGSTRP |
| T...K..PP.N.P..SGNAY.VVSR......L.D...Q.L.EW.KDT.SPDE.LWAT.QRMP.VPGS..P | |
| Retrocopy | TDATKGPPPINTPMFSGNAYFVVSRAFVHHALTDAEVQALLEWEKDTFSPDEHLWATLQRMPRVPGSVPP |
| Parental | NAKFDMTDLNAIARLVKWQGHEGSDGSPDAVYAECQGRHVRGICVYGVGDLRWLLDQHHLFANKFDIEID |
| N.K.D..D..A.AR.VKW.G....D....A.Y..C.G...R..CVYG.GD.RWLL.Q.HL.ANKFD.EID | |
| Retrocopy | NDKYDTSDMLALARVVKW-GYLAGDVEQGAPYRPCTGDYRRSVCVYGAGDVRWLLAQRHLLANKFDPEID |
| Parental | PFVIYCLEKYLRRKALA |
| ...I.CLE.YLR.KAL. | |
| Retrocopy | DVAIRCLESYLRMKALS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tetraodon nigroviridis was not studied using RNA-Seq expression data.
Tetraodon nigroviridis was not studied using ChIP-Seq data.
Tetraodon nigroviridis was not studied using EST data.
Tetraodon nigroviridis was not studied using FANTOM5 data.
retro_tnig_25 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tnig_25 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tetraodon nigroviridis | ENSTNIG00000015814 | 1 retrocopy |
retro_tnig_25 ,
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