>retro_tnig_3
ATGATCAAACCGTACGTGAGACAAAGTGAGGAAGAGGAGGTGGCTGGCCCTCAGCAGTGGATGGACGGGGACGTGAGCTC
GCCCGACGGAGGCACGGCCGTCCCGCCGCACCGCTACCGAGCGGGTGGAGGGAGCCAACAGGCCCCGGAGATGGGCAGCG
AGGACGCCGAGGAAGAGGAGGAAGACGAAGAGGCCCAGGGCGACGAGGGCGAGTCCAAACGGCGAGGGCCCAAGAAAAAG
CGCATGACCAAGGCCCGTGTGGAGCGGTTCCGCGCCCGGCGCATCAAGGCCAACGCTCGGGAGCGCTCGCGCATGCACGG
TTTGAACGACGCGCTGGAGAACCTGCGCAGCATCATGCCCTGCCACTCCAAGACACAGAAACTGTCCAAGATCGAGACCT
TACGGCTGGCCCGCAACTACATCTGCGCCCTGTCCGAGGCCCTGGAGGCGGGGCTCTCCACCGAGAGCAGGGCCTTCATG
GAGACGCTGTGCAAGGGCCTCTCGCAGCCCACCACCAACCTGGTGGCCGGCTGCTTGCAGATGGCGCCCGCCCCTGGAGC
AGGCAACAGGCCCGAGGACAGACCCAGAGCCCGGGCTCCTCATGCTCCTCTGGGCGTGGTCAGCTACGCCTCCCCGGGCC
TGCCGAGTCCACCGTACGGCACTTTTGACTCTGCTCACCTGCTGCACCTCAGGGCCATGAAGGGGGGGGTGTATGAGAAC
CCCTCGCCCAGCGACTACAACTCCGGCCTGGGGACGCCTCCGTACGACGGACCCCCGACGCCGCCGCTCAGCATCAGCAC
CAACGCAGTCCCCAAACAGGAGCCGTCCCCACACTACCCACCACCACACCACTACTCGCCCTCCCCCGTGGAGCAGGACA
TGTATCAGACAGGCTACGACGTGCACCTGGAGGCGTCCTACGACACCTATCACCCGCCCTCATTGCCCCCCCGACAGATA
ACCTCCATCTACAGAGACTGA
ORF - retro_tnig_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.21 % |
Parental protein coverage: |
69.51 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EEQQESENKPKRRGPKKKKMTKARLQRFKVRRMKANARERNRMHGLNDALESLRKVVPCYSKTQKLSKIE |
| EE.Q..E...KRRGPKKK.MTKAR..RF..RR.KANARER.RMHGLNDALE.LR...PC.SKTQKLSKIE |
Retrocopy | EEAQGDEGESKRRGPKKKRMTKARVERFRARRIKANARERSRMHGLNDALENLRSIMPCHSKTQKLSKIE |
|
Parental | TLRLAKNYIWALSEVLRSGKAPDLMSFVQVLCKGLSQPTTNLVAGCLQLNPRTFLPEQTPDLPTHLPPAG |
| TLRLA.NYI.ALSE.L..G.......F...LCKGLSQPTTNLVAGCLQ..P.........D.P....P.. |
Retrocopy | TLRLARNYICALSEALEAGLSTESRAFMETLCKGLSQPTTNLVAGCLQMAPAPGAGNRPEDRPRARAPHA |
|
Parental | AVAYPAHFPFQSPGLTAGLPSPPYGTMEPSHIFH--QVKGQSYGALEPFFDSVLLSDGPAFDPPLSPPLS |
| ...........SPGL....PSPPYGT....H..H....KG..Y....P......L...P..D.P..PPLS |
Retrocopy | PLGVVSY---ASPGL----PSPPYGTFDSAHLLHLRAMKGGVYENPSPSDYNSGLGTPP-YDGPPTPPLS |
|
Parental | INGN |
| I..N |
Retrocopy | ISTN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tetraodon nigroviridis was not studied using RNA-Seq expression data.
Tetraodon nigroviridis was not studied using ChIP-Seq data.
Tetraodon nigroviridis was not studied using EST data.
Tetraodon nigroviridis was not studied using FANTOM5 data.
retro_tnig_3 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tnig_3 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.