RetrogeneDB - Retrocopy retro_tnig

	RetrogeneDB ID:	retro_tnig_31
Retrocopy location	Organism:	*Tetraodon (Tetraodon nigroviridis)*
	Coordinates:	Un_random:15547938..15548400(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	morn3 (2 of 2)
	Ensembl ID:	ENSTNIG00000009087
	Aliases:	None
	Description:	MORN repeat containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-152]

Retrocopy-Parental alignment summary:

						
>retro_tnig_31
AACGAATACAGGGGAGACTGGCTGGATGATAAGAAACATGGCTACGGAGTTTGGACAAAGACTACTTCCAAGTATATAGG

ATATTGGAAATTTGGAAAACCGGATGGAAATGGGACCTACAAGGTGCTGGACCCAAAACTGAATGATTTTGTTGTGAAGT

ACGCTGGTAATTGGAGAAATGGCAAAAAGCACGGCAGGGGAATTTACCTCTACGATAACTCTTCAGTTTATGAAGGCCAA

TGGGTTGAGGGCCGTCGGACTGGCTGGGGAAAGATGTATTATCCAAATGGAGATGTGTATTTAGGAGACTGGTTGAACGA

TCGGTATCATGGGCAAGGCGTCATGCACTATGCAAATAAAAATGCTCATGTCGGCGAATGGAGAGATGGCCTGAAGAATG

GACGAGGAACATCTTACTCTCACAGTGAAGACCTTTATTTTGAGGGCATCTGGGTGGATGGT

ORF - retro_tnig_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	55.77 %
Parental protein coverage:	66.38 %
Number of stop codons detected:	0
Number of frameshifts detected	0

Retrocopy - Parental Gene Alignment:

									ParentalDKYTGEWLDNKKHGRGTQVWKKSGAVYSGEWKHGKPDGYGTYSVLLPETKVYATKYCGDWKNGQKHGNGT
		..Y.G.WLD.KKHG.G..VW.K....Y.G.WK.GKPDG.GTY.VL.P.......KY.G.W.NG.KHG.G.
RetrocopyNEYRGDWLDDKKHGYG--VWTKTTSKYIGYWKFGKPDGNGTYKVLDPKLNDFVVKYAGNWRNGKKHGRGI
ParentalYVYSNSAVYEGLWIEDRRAGWGKMNYENGDVYEGEWVKDKCHGRGIIRYANGNWYEGGWREGKKNGRGKV
		Y.Y.NS.VYEG.W.E.RR.GWGKM.Y.NGDVY.G.W..D..HG.G...YAN.N...G.WR.G.KNGRG..
RetrocopyYLYDNSSVYEGQWVEGRRTGWGKMYYPNGDVYLGDWLNDRYHGQGVMHYANKNAHVGEWRDGLKNGRGTS
ParentalYFPDNGQLYEGLWVDG
		Y........EG.WVDG
RetrocopyYSHSEDLYFEGIWVDG

							

							Legend:
							
								*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

						

RNA-Seq - click to see more details

Tetraodon nigroviridis was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tetraodon nigroviridis was not studied using ChIP-Seq data.

EST - click to see more details

Tetraodon nigroviridis was not studied using EST data.

TSS - click to see more details

Tetraodon nigroviridis was not studied using FANTOM5 data.

Lab - click to see more details

retro_tnig_31 was not experimentally validated.

Retrocopy orthology:

Retrocopy retro_tnig_31 has 0 orthologous retrocopies within teleost group .

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tetraodon nigroviridis	ENSTNIG00000009087	1 retrocopy	retro_tnig_31 ,

Parental	DKYTGEWLDNKKHGRGTQVWKKSGAVYSGEWKHGKPDGYGTYSVLLPETKVYATKYCGDWKNGQKHGNGT
	..Y.G.WLD.KKHG.G..VW.K....Y.G.WK.GKPDG.GTY.VL.P.......KY.G.W.NG.KHG.G.
Retrocopy	NEYRGDWLDDKKHGYG--VWTKTTSKYIGYWKFGKPDGNGTYKVLDPKLNDFVVKYAGNWRNGKKHGRGI

Parental	YVYSNSAVYEGLWIEDRRAGWGKMNYENGDVYEGEWVKDKCHGRGIIRYANGNWYEGGWREGKKNGRGKV
	Y.Y.NS.VYEG.W.E.RR.GWGKM.Y.NGDVY.G.W..D..HG.G...YAN.N...G.WR.G.KNGRG..
Retrocopy	YLYDNSSVYEGQWVEGRRTGWGKMYYPNGDVYLGDWLNDRYHGQGVMHYANKNAHVGEWRDGLKNGRGTS

Parental	YFPDNGQLYEGLWVDG
	Y........EG.WVDG
Retrocopy	YSHSEDLYFEGIWVDG

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_tnig_31