>retro_tnig_33
ACGCAGGAGCAGCAGCCCGCCGACGAGAACTGGGACCCCAGCGGGCAGACGTGGCCCTGCCAGAGCAGCCGCTCCCACAT
CGCCCAGTACCAGGCGTCCAGCTTCCAGGAGAGCCTGCAGGTACGCGCACGCGCACACGCACCTCATCTCACCCCCGGCT
CTCCCTGACACCCTGTCTTCTTCTTCCAGGAGGACCCGGCCCCGGAGGGCGGCAGGTAAGGCTGCGCCCGGGCCCCCTGT
CTCCCCCCGAGGCTACAGTCTTTGTGCTTGGCAGCGAGCAGAAAGGTCAGGACCAACATTGACTTGTCCGATCCAAAGAA
GTGAGCTGCTGAGAGAAAAACCAATGGTTTTTCTGTGT
ORF - retro_tnig_33 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.41 % |
Parental protein coverage: |
66.3 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SQTRRPSERTWLKQGKTEPTADSTLPHSSLFLPAGEPAGRRGPARAAAP-TSPSTRRPASRRACRRTRPR |
| .Q...P....W...G.T.P...S...H................ARA.AP..SP...........RRTRPR |
Retrocopy | TQEQQPADENWDPSGQTWP-CQSSRSHIAQYQASSFQESLQVRARAHAP>ISPPALPDTLSSSSRRTRPR |
|
Parental | RKAGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRSGSLSSRTCLPSC |
| R.AGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRS..L........C |
Retrocopy | RAAGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRSELLREKPMVFLC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tetraodon nigroviridis was not studied using RNA-Seq expression data.
Tetraodon nigroviridis was not studied using ChIP-Seq data.
Tetraodon nigroviridis was not studied using EST data.
Tetraodon nigroviridis was not studied using FANTOM5 data.
retro_tnig_33 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tnig_33 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.