RetrogeneDB ID: retro_trub_17

Retrocopy location

• Organism: Fugu rubripes (Takifugu rubripes)
• Coordinates: scaffold_7:2701017..2702097(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTRUG00000016504
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: NPY8AR
• Ensembl ID: ENSTRUG00000018631
• Aliases: None
• Description: neuropeptide Y/peptide YY receptor [Source:RefSeq peptide;Acc:NP_001098073]

Sequence

>retro_trub_17
GTCATGGAGCCGCAGCTCAACAACCAGGCCCCGTGGAAGGAATTCCCGTGGGACTTCACGGATGACTGCTCGCTGTCGGT
GGGGGGCACCACCTTCCTCATCGTCGCTTACAGCGCCGTCATGGCGGTCGGACTCATCGGCAACTCGTGCCTGGTGTTCA
TCATCTTGCGGCACAAGGAGATGCGCAACGTCACCAACATCTTCATCGTCAACCTGTCCTGCTCCGACATCCTCATGGGC
GTCGTTTGCCTGCCGGTCACCATCATCTACACGCTGATGGACCGCTGGATCCTGGGCGATGCTCTGTGTAAGATCACGCC
CTTCGTCCAGTGCATGTCCGTGTCCGTGTCCATCTTCTCCCTGGTCCTCATCACCATGGAGCGCTACCAACTCATCATCC
ACCCCACCGGATGGAAGCCCGTGCTGGGCCAGTCCTACCTGGCCGTGGCCGTCACCTGGATCGTGGCGTGTCTCATCTCC
GTGCCTTTTCTCTCGTACAGCGTGCTCACCCTGCCCTTCCAGAACCTGAGCGTCCCCTTCCCCATCAGCGACCATCTCAT
CTGCATGGAGCGCTGGCCCTCGGTTCAGGAACGGCGAGCCTACACCACCTCCCTGCTGGTCTTCCAGTACTTCCTGCCGC
TGGTGCTCATCACCGTTTGCTACCTGCACATCTACCTGCGTCTCAGGAGGCGGAAGGACATAGTGGATCGTGGTCGGAAC
GGCGCCCAGAAGAGAAACAGGGGCTCCGCGAGGATCAACGCCATGCTGGTTTCCATCGTGGTGGCGTTCGCTGTCTCCTG
GCTGCCACTAAACATCTTCAACACCGTGTTCGACTGGCACCACGAGGCCATCCCCTCCTGCGGCCACGACATCATTTTCT
CCTTCTGCCACCTCGCCGCCATGGCGTCCACCTGCATCAACCCCGTCATCTACGGCTTCCTCAACAGCAACTTCCAGAAG
CAGCTCAAGTCGACGCTGCTGCGCTGCCGCTGCTGGGGCGCGGTCGAGCGGTACGAGAGCGTCCCGCTGTCCACGGTCAG
CACCGAGGTCACCAAGGGGTCGATCCTCAGCAACGGATCT

Alignment

ORF - retro_trub_17 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.16 %
• Parental protein coverage: 88.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WEGSDWAETSQCPPSIGGATFWIVAYSAIIAIGLLGNAGLVFIIARQQELRNVTNILIANLSCSDILMCV
          W....W..T..C..S.GG.TF.IVAYSA..A.GL.GN..LVFII.R..E.RNVTNI.I.NLSCSDILM.V
Retrocopy WKEFPWDFTDDCSLSVGGTTFLIVAYSAVMAVGLIGNSCLVFIILRHKEMRNVTNIFIVNLSCSDILMGV

Parental  VCLPVTVIYTLMDRWVLGEALCKVTPFVQCMSVTVSIFSLVLIALERHQLILHPTGWSPAAGHSYLAVGL
          VCLPVT.IYTLMDRW.LG.ALCK.TPFVQCMSV.VSIFSLVLI..ER.QLI.HPTGW.P..G.SYLAV..
Retrocopy VCLPVTIIYTLMDRWILGDALCKITPFVQCMSVSVSIFSLVLITMERYQLIIHPTGWKPVLGQSYLAVAV

Parental  TWLVACFISLPFLSFNVLTNDPFQNISLPANPFRDHLICMEKWPSNKHRLAYMTSLLVFQYCLPLVLVLL
          TW.VAC.IS.PFLS..VLT..PFQN.S.P..P..DHLICME.WPS...R.AY.TSLLVFQY.LPLVL...
Retrocopy TWIVACLISVPFLSYSVLTL-PFQNLSVPF-PISDHLICMERWPSVQERRAYTTSLLVFQYFLPLVLITV

Parental  CYLRIFLRLKRRRSQRDMLERSRRTR--GAQRINVMLLAIVVAFALCWLPLNVFNTLFDWHHQVLPDCQH
          CYL.I.LRL.RR....D........R..G..RIN.ML..IVVAFA..WLPLN.FNT.FDWHH...P.C.H
Retrocopy CYLHIYLRLRRRKDIVDRGRNGAQKRNRGSARINAMLVSIVVAFAVSWLPLNIFNTVFDWHHEAIPSCGH

Parental  DAIFSACHLTAMASTCINPVVYGFLNSNFQKELKATLQRCQCSNRTTESYESFPLSTVGSE
          D.IFS.CHL.AMASTCINPV.YGFLNSNFQK.LK.TL.RC.C.....E.YES.PLSTV..E
Retrocopy DIIFSFCHLAAMASTCINPVIYGFLNSNFQKQLKSTLLRCRCWG-AVERYESVPLSTVSTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Takifugu rubripes was not studied using RNA-Seq expression data.

ChIP-Seq

Takifugu rubripes was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_trub_17 retrocopy.

TSS

Takifugu rubripes was not studied using FANTOM5 data.

Lab

retro_trub_17 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_trub_17 has 1 orthologous retrocopies within teleost group .

Species	RetrogeneDB ID
Tetraodon nigroviridis	retro_tnig_10

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tetraodon nigroviridis	ENSTNIG00000013601	1 retrocopy	retro_tnig_10,
Takifugu rubripes	ENSTRUG00000018631	1 retrocopy	retro_trub_17 ,
Xiphophorus maculatus	ENSXMAG00000000370	1 retrocopy	retro_xmac_12,