RetrogeneDB ID: | retro_trub_22 | ||
Retrocopylocation | Organism: | Fugu rubripes (Takifugu rubripes) | |
Coordinates: | scaffold_68:167960..168839(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTRUG00000005151 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | lrrc30 | ||
Ensembl ID: | ENSTRUG00000002387 | ||
Aliases: | None | ||
Description: | leucine rich repeat containing 30 [Source:ZFIN;Acc:ZDB-GENE-050506-25] |
Percent Identity: | 68. % |
Parental protein coverage: | 93.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VVTLLFRVQLSSLPAEIGRLQKLRVLFAYRNRLTEVPEELGACTKLEVLSLANNQLSTLPASFSNLTQLK |
V...L....LSSLP.EIG.L.KLRVLFA.RNRL.EVPEELG.CT.LEVLSLANNQ...LP.S......L. | |
Retrocopy | VILNLWGNNLSSLPPEIGLLKKLRVLFACRNRLSEVPEELGSCTCLEVLSLANNQIASLPGSLATMHNLT |
Parental | KLNLSHNLIAHVPACVYNMKALVFLHLACNRLDNLAENIQALVELKILIVEGNSLQSLPKALCCLTRLEL |
KLNLS.N.I.H.P.CVY.MK.LVFLHLACNRL...A..IQ.LV.LKILIVEGNS...LPK.LC....LEL | |
Retrocopy | KLNLSYNHIVHIPTCVYSMKGLVFLHLACNRLETIADQIQDLVNLKILIVEGNSIHTLPKTLCSMNSLEL |
Parental | LNLDFNHIKDVPQELHQLTRLQRLACHPLDTGLHIVHNPLLKPVKEVLEGGLGALYNYLR |
LN.DFN....VP.E...L.RL.RLACHPLD.GLHIVHNPLLKP..EVL.GGL.ALYNYL. | |
Retrocopy | LNVDFNELQNVPVEMYLLSRLGRLACHPLDKGLHIVHNPLLKPIQEVLQGGLSALYNYLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | RetrogeneDB ID |
---|---|
Tetraodon nigroviridis | retro_tnig_8 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oreochromis niloticus | ENSONIG00000009892 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000005041 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000002387 | 1 retrocopy |
retro_trub_22 ,
|
Xiphophorus maculatus | ENSXMAG00000002735 | 1 retrocopy |