RetrogeneDB ID: | retro_trub_38 | ||
Retrocopy location | Organism: | Fugu rubripes (Takifugu rubripes) | |
| Coordinates: | scaffold_386:189288..189996(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSTRUG00000006565 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_trub_38
GTTAACCTCGCGATTCCTCCAGATAACTCAGAGTTGAGGAGAGAAGTGCTTGAAGTCCATGCCACTGTTGTCAGCCACCA
TGATCCAACTAATGTTTTGCTGAACTACTTTTCCACCTGGTATAAGCTCAGAAGAGCTGTTGCATGGTTCCTAAAGCTGA
AGAGTTTGCTCACCCAATGCGCTCTCAAAAGAAAGGGGACCTTAAAGGCAGTCATGACTGGCCCCATGACACTCTCTGTT
CAAGACCTGGAAGAGGCAGAAGAAGCCATTGTGAAGTTCTGCCAAAATCAAGCACTTTTGCAGGAGATGGCAAGTCTGCG
CAATGGAAGGAATGTCAGCCGGAAAAGCTCCCTCTTCAAACTGGATCCATTCCTTGACCATGGCATATTAAGAATTGGTG
GTCGCCTGAGCAGGATGGCTATGCCAAAGGAGCAGAAACATCCAGCTATCTTGCCTAAGAGGCATTTCGTCTCAGAGCTC
CTGCTTCGGCACATTCATCAGCAGGTTGGGCATTGTGGCAGAAATCACATTTTGGCAAGCTTAAGGCAAAAATATTGGAT
TCCTTGTGCAAATTCCTTTGCAAGGGAAATTGTGAACAATTGTGTCCCCTGCAGGCGAAACTATGCACATGCAGGTGAAC
AAAAGCTGTCCGATCTGCCAATTGATCGTTTGACTCCTGACCTCCCTCCATTCTCATACGTCGGAGTG
ORF - retro_trub_38 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.93 % |
| Parental protein coverage: | 57.96 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LKMAAPPLAVSSQFNKGMSVLSLTKECHHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQCTLKKKGTL |
| ...A.PP....S...........T...HHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQC.LK.KGTL | |
| Retrocopy | VNLAIPP--DNSELRREVLEVHATVVSHHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQCALKRKGTL |
| Parental | KAVTAGPMTLSVQDLEEAEEAIVKFCQNQGFSQEMASLRNGRNVSRKSSIFKLDPFLD--ILRVGGRLSR |
| KAV..GPMTLSVQDLEEAEEAIVKFCQNQ...QEMASLRNGRNVSRKSS.FKLDPFLD..ILR.GGRLSR | |
| Retrocopy | KAVMTGPMTLSVQDLEEAEEAIVKFCQNQALLQEMASLRNGRNVSRKSSLFKLDPFLDHGILRIGGRLSR |
| Parental | MAMPEKQKHPAILPKRHFISELLLRHIHQQVGHCGRNHILASLRQKY---CANSFAREIVNNCVPCRRNY |
| MAMP..QKHPAILPKRHF.SELLLRHIHQQVGHCGRNHILASLRQKY...CANSFAREIVNNCVPCRRNY | |
| Retrocopy | MAMPKEQKHPAILPKRHFVSELLLRHIHQQVGHCGRNHILASLRQKYWIPCANSFAREIVNNCVPCRRNY |
| Parental | ARASEQKMSDLPIDHLTPDLPPFSYVGV |
| A.A.EQK.SDLPID.LTPDLPPFSYVGV | |
| Retrocopy | AHAGEQKLSDLPIDRLTPDLPPFSYVGV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Takifugu rubripes was not studied using RNA-Seq expression data.
Takifugu rubripes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_trub_38 retrocopy.
Takifugu rubripes was not studied using FANTOM5 data.
retro_trub_38 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_trub_38 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Takifugu rubripes | ENSTRUG00000006565 | 1 retrocopy |
retro_trub_38 ,
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