RetrogeneDB ID:

retro_trub_5

Retrocopy
location
Organism:Fugu rubripes (Takifugu rubripes)
Coordinates:scaffold_268:58542..64344(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTRUG00000005019
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MYHM2126-2
Ensembl ID:ENSTRUG00000007797
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_trub_5
AAGTCCACCATGAGCGACTCTCTAATGGCTGAATTTGGAAAGGCTGCTCCTTACCTGAGGAAGTCAGAAAAGGAGCGTCT
TGAAGCTCAGACCAGAGCTTTTGACATCAAGATTGAATGCTTTGTTGTGGATGAGAAGGTGGAATATATGAAGGGACAAA
TCCAGAGCAAAGATGGAGGGATGGTAACGGTCAAAAAGGAGGATGGAGCTACAGTGACTGTTAAAGAGTCAGATGTCCAC
CCCCAGAACCCACCAAAATTTGATAAAATTGAAGACATGGCAATGTTCACCTTCCTCCATGAGCCGGCTGTGCTGTTTAA
CCTCAAAGAGCGTTATGCTGCCTGGATGATCTACACTTATTCAGGATTGTTCTGCGTCACAGTCAATCCCTACAAGTGGC
TTCCAGTCTATGATGCTGAAGTGGTGGCAGCTTACAGAGGGAAAAAGCGAACGGAGGCCCCCCCTCATATATTTTCCATC
TCAGATAATGCCTACCAGTACATGCTGACTGACCGGGAGAACCAATCGGTGCTCATCACAGGAGAATCAGGAGCTGGGAA
GACTGTGAACACCAAGAGGGTCATCCAGTACTTTGCCAGCATTGCTGCCGTCGGGAGTGGTTGCAGAAAAGATGCCAGTA
AAGGGACTCTGGAGGATCAGATCATCCAGGCAAATCCCGCCCTGGAGGCTTTCGGCAATGCAAAAACGTTGAGAAATGAC
AATTCTTCAAGATTTGGAAAATTCATACGAATTCATTTTGGTCCAAGTGGCAAACTCTCCTCTGCTGACATTGAGACGTA
TCTACTGGAGAAGTCGCGAGTCACCTTTCAGCTGAAAGCTGAGAGAAATTATCACATCTTTTATCAGATCTTGTCCAATC
AAAAGCCAGAGCTTCTGGACATGTTACTTATCACCAACAACCCATACGACTACTCCTACATCTCCCAAGGAGAGGTGACG
GTTGCCTCCATCAATGACTCAGAAGAGCTGATGGCCACTGATAGTGCCTTTGATGTTCTGGGCTTCACTCCAGAAGAGAA
GATGGGGGTTTACAAACTGACGGGTGCAATCATGCACTATGGTAACATGAAGTTCAAGCAGAAGCAACGTGAAGAGCAGG
CTGAGCCAGATGGGACAGAAGCTGCGGATAAGTCATCTTATCTCATGGGACTGAATTCCGCGGACCTCATCAAGGGGCTG
TGCCACCCCCGAGTCAAAGTAGGAAATGAATATGTCACCAAAGGCCAAAGCGTGGACCAAGTCTACTATGCCCTCGGTGC
TCTTGCCAAATCGGTATATGAAAAGATGTTCAACTGGATGGTGGTGAGAATCAACCAATCCCTTGACACAAAACAGCACA
GGCAGTACTTCATAGGAGTGCTGGACATTGCAGGATTTGAGATCTTTGATTATAACACCTTTGAGCAGCTCTGCATCAAC
TTTACCAATGAAAAACTGCAACAGTTTTTTAACCATCACATGTTTGTTCTTGAGCAAGAAGAGTACAAAAAAGAGGGTAT
CGACTGGGAGTTCATCGATTTTGGGATGGACCTGCAAGCTTGTATTGACCTCATCGAAAAGCCACTGGGAATTCTTTCAA
TTCTGGAGGAGGAGTGCATGTTCCCCAAAGCCAGTGACCAGACCTTCAAGTCCAAGCTCTATGATAATCATTTGGGAAAG
AACAAAATGTTTGAAAAACCACGAGCAGCAAAGGGGAAAGCAGAGGCTCACTTTGCCCTGGTTCACTATGCAGGAACAGT
GGACTACAACATCACCAACTGGCTGGTGAAGAACAAAGACCCTCTAAATGAAACCGTGGTTGGTCTTTACCAGAAGTCGT
CCCTGAAACTACTCAGTGTGCTGTTTTCAACCTTCTCATCTGACAGCAGTGACAAAGGAGGCAAAGGGGCCAAGAAGAAA
GGTTCCTCCTTCCAAACTGTGTCTGCGCTTCACAGGGAAAATCTAAACAAGCTGATGACCAACCTAAAGACAACGCACCC
CCACTTTGTACGCTGTCTGATTCCCAATGAGCGGAAAACCCCAGGGGTCATGGACAACTGCCTTGTCATGCACCAGCTGC
GCTGTAACGGAGTTCTGGAAGGCATCCGGATCTGCAGAAAGGGCTTCCCTAATAGAGTTCTGTATGGCGACTTTAAACAA
CGCTACAGGATCCTGAATGCCTCTGCCATCCCTGAAGGGCAGTTCATTGACTGCAAGAAGAGTGCTGAAAAGTTACTGGG
ATCTCTGGACATTGATCATACACAGTACAGGTTTGGCCACACAAAGGTCTTCTTTAAGGCTGGTTTACTAGGTACACTCG
AGGAGATGAGAGATGAACAACTCTCTCGGATCCTCACCAGGATCCAGGCTAATGCCCGGGGAATCCTAATGAGGGTGCAG
TTTGCTAAGCTGCTGGAACGCAGAGATGCTCTTATGGTCATCCAATGGAACCTTCGCTCTTTCTTGGGCGTGAAGAACTG
GCCCTGGATGAAGCTTTTCTTCAAGATCAAGCCCCTGTTAAAGAGTGCTGAGGCTGAGAAGGAAATGGCCAGCATGAAAG
ATGAGTTCAACAAGTTGAAAGAAGCTTTGGAAAAATCAGAAACCAGGCGGAAAGAACTGGAGGAGAAAATAGTTACTCTT
CTCCAAGAGAAGAATGACCTGACTCTGCAGATTCAGTCTGAACAGGATACGCTAACAGATGCCGAAGAACGCTGCGAACA
GCTGATAAAGAGCAAAATTCAACTGGAGGCCAAGCTCAAGGAAATTACAGAGAGGCTTGAAGATGAGGAGGAGATCAATG
CAGATCTCACTGCTAAGAAACGGAAGCTCGAAGATGAATGTTCCGAGTTAAAGAAAGATATAGATGACCTGGAGCTGACT
CTGGCAAAGGTTGAGAAAGAAAAGCATGCAACAGAAAATAAGGTGAAAAATCTGACAGAGGAGATGGCTTCGCAGGATGA
CAACATCATGAAACTAACCAAAGAGAAGAAGGCACTGCAGGAAGTTCACCAGCAAACACTGGATGATCTTCAGAGTGAAG
AAGACAAAGCCAACAGTTTGACCAAAGCCAAAGCCAAGCTCGAACAACAAGTGGATGATCTGGAGGGCTCACTGGAGCAG
GAGAAGAAAGTCAGAATGGACATTGAGCGATCAAAGAGGAAGCTTGAAGGAGACTTTAAGCTGATGCAAGAGAGCTTGAT
GGACCTGGAAAATGATAAACAGCAGCTGGAGGAAAAATTAAAGAAGAAAGACTTTGAAACTGTCCAAATGAATTCAAGAC
TAGAAGATGAGCAAGTTTCCACAAATCAGCTCCATAAAAAGGTAAAAGAGAGTCAGGCAAGAATTGAAGAACTGGAGGAA
GAGCTGGATGCTGAGCGTGCAGCTCGAGCCAAGGTTGAGAAACAGCGCTCTGATCTTTCTCGCGAGCTCGAGGACATCAG
CGAGCGCCTTGAGGAGGCTGGAGGAGCAACATCCGCACAAGTAGAGTTAAACAAAAAGAGGGACTCTGAATTTCAGAAGC
TGCGGCGAGAACTGGAGGAATCTACACTCCAACACGAGTCTACTGCCGCCTCCCTCAGGAAGAAACACGCCGACAGTGTT
GCTGAGCTCGGTGAGCAAATCGATAACTTACAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAGAGTGAGCTGAAACTGGA
ATTGGATGACCTGTGCTCCAACATGGAGACTGTAATTAAGGCCAAGTCTAATATGGAGAAGATGTGTCGTGCGATGGAAG
ACAGCATGAACGAATACAAAAACAAACAGGATGAAGCTCAAAGGGCCATCAGTGACCTGACTACACAGAGGGCCAAGTTT
CTCACCGAGAATGGCGAGCTTGGCCGTCGACTAGAGGAGAAGGAATGTCTGATATCACAGCTGACCAGAGCAAAGATGTC
CTACAACCAGCAGGTCGAAGATCTTCGTCGACAACTGGAAGAAGAAGTCAAGGCAAAAAATGCTCTAGCGCATGCTGTCC
AGTCGGCTCGTCATGACTGTGATCTGCTCCGAGAGCAGTTTGAGGAGGAGCAAGAGGCAAAAGCTGAGTTGCAACGAGCT
CTTTCCAAATCCAACACTGAGGTCTCAACATGGAGGACAAAATATGAGTCTGATGGAATCCAGCGAATGGAGGAACTAGA
AGAAGCAAAAAAGAAATTGGTTCAGAGACTTCAGGAGGCTGAGGAGGCCATCGAGGCTGTGAATGCGAAGTGTTCCTCTC
TGGAGAAAACCAAACATCGTCTCCAAAATGAGATAGAAGACCTGATGCTGGACCTGGAGAGAGCCAATGCAGCATCTGCA
GCACTCGATAAGAAGCAGCGATCGTTTGACAAAATCATGGCTGAGTGGAAGCAGAAGTTTGAGGAGTCTCAGTGTGAGCT
GGAGGCCTCCCAGAAGGAGGCTCGTTCTCTGAGCACTGAACTCTTCAAACTGAAGAATGCCTATGAAGAGTGTCTTGAGC
AACTTGAGACAACAAAGAGAGAGAACAAGAACCTCCAGGAAGAGATTTCTGACCTCACTGACCAGCTTGGGGAAGGTGGT
AGGAGTGCTCATGAGCTGGACAAAATGCGGAAACAGCTCGAACAAGAAAAATCAGAGCTTCAGACCGCACTGGAGGAGGC
TGAGGGGTCTCTGGAGCATGAAGAGAGCAAGATCCTTCGATCTCAGCTGGAATTCAACCAAGTGAAGGCTGACATGGAGC
GCAAGCTGTCAGAAAAAGATGAAGAGATGGAGCAGGCCAAGAGGAACTACCAGCGCATGCTTGATTCACTTCAGTCCTCA
CTGGAATCTGAAACGAGGAGCCGCAATGAGGCCTTGAGACTAAAGAAGAAGATGGAGGGTGATCTCAACGAGATGGAAAT
CCAGCTAAGCCAAGCAAACAGACAGGCAGCTGATGCCCAGAAACAAATCAAGAACCTCCAGACCTTTATGAAGGATCTTC
AGATGCAGCTTGATGATGCTCATCATGCTAATGATGATATGAGAGAGAACACTGCTCTCCTGGAACGCAGACACAATCTA
ATCCAGGCCGAGCTTGAGGAGGTCCGAGCTGCCTTTGAGCAGACGGAGAGAACCCGCAAGCTGGCAGAGCAGGAGCTGAC
TGATATCACTGAGCGCATGCAACTCTTGCACTCCCAGAACACCAGCCTGCTCAACCAGAAGAAGAAGCATGAAGCTGACC
TGCTGCAACTCCAGACAGAGACGGAAGAGGCCATCCAAGAAAATCGCAATGCCGAGGAGAAAGCCAAGAAAGCCATCAAT
GATGCTGCCATGATGGCTGAGGAACTGAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGCGCATGAAAAAAAACATGGA
GCAAACCATCAAAGACCTTCAGCATCGGCTGGATGAGGCTGAGCAGGTGGCCATGAAGGGTGGCAAGAAGCAGCTACAGA
AGCTGGAGACTCGCATCAAAGAGCTGGAGAGTGAACTGGAGGCGGAGCAAAGAAAGGGAATAGAGTCCATCAAGGGGATC
CGCAAATATGAGCGACGCCTCAAGGAGCTCACCTACCAGACTGAAGAGGACCGCAAGAACATGGCCCGCCTCCAGGAACT
GGTAGACAAGCTGCAGCTGAAAGTCAAGTCCTATAAACGAGCCGCGGAGGAGGCTGAGGAGGCGGGAAACGCCAACATGG
CTAAACTTCGCAAACTGCAGCATGAGCTGGAGGAGGCCGAGGAGAGGGCTGACATTGCTGAGTCCCAGGTGAATAAGCTG
AAGGCCAAAACCCGGGACGGTTCCACCAAGAAGGGCCTGGAT

ORF - retro_trub_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.89 %
Parental protein coverage: 99.9 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGDAQMATFGAAAPYLRKSERERMEASTRAFDIKKECFVPDPVQEFVKATVISREGDKVTVETEHGKTVT
M.D..MA.FG.AAPYLRKSE.ER.EA.TRAFDIK.ECFV.D...E..K....S..G..VTV..E.G.TVT
RetrocopyMSDSLMAEFGKAAPYLRKSEKERLEAQTRAFDIKIECFVVDEKVEYMKGQIQSKDGGMVTVKKEDGATVT
ParentalFKDTQILQQNPPKFNMIEDMAMLTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNQEVVV
.K......QNPPKF..IEDMAM.TFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVY..EVV.
RetrocopyVKESDVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDAEVVA
ParentalAYRGKKRSEAPPHIFSISDNAYQYMLADRENQSILITGESGAGKTVNTKRVIQYFASIAA--GGVKKDST
AYRGKKR.EAPPHIFSISDNAYQYML.DRENQS.LITGESGAGKTVNTKRVIQYFASIAA...G..KD..
RetrocopyAYRGKKRTEAPPHIFSISDNAYQYMLTDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVGSGCRKDAS
ParentalTKDKGTLEDQIIQANPALEAFGNAKTIRNDNSSRFGKFIRIHFDTRGKLASADIETYLLEKSRVTFQLKA
...KGTLEDQIIQANPALEAFGNAKT.RNDNSSRFGKFIRIHF...GKL.SADIETYLLEKSRVTFQLKA
Retrocopy---KGTLEDQIIQANPALEAFGNAKTLRNDNSSRFGKFIRIHFGPSGKLSSADIETYLLEKSRVTFQLKA
ParentalERDYHIFYQILSNKKPEILEMLLITNNPYDYAFISQGETQVASIDDAEELMATDSAFDVLGFTQEEKNSV
ER.YHIFYQILSN.KPE.L.MLLITNNPYDY..ISQGE..VASI.D.EELMATDSAFDVLGFT.EEK..V
RetrocopyERNYHIFYQILSNQKPELLDMLLITNNPYDYSYISQGEVTVASINDSEELMATDSAFDVLGFTPEEKMGV
ParentalYKLTGAIMHYGNMRFKQRQREEQADADGTEDADKSAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQNVAQ
YKLTGAIMHYGNM.FKQ.QREEQA..DGTE.ADKS.YLMGLNSADLIKGLCHPRVKVGNE.VTKGQ.V.Q
RetrocopyYKLTGAIMHYGNMKFKQKQREEQAEPDGTEAADKSSYLMGLNSADLIKGLCHPRVKVGNEYVTKGQSVDQ
ParentalVNYAVGALSKAVYEKMFLWMVVRINQSLETRQPRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFF
V.YA.GAL.K.VYEKMF.WMVVRINQSL.T.Q.RQYFIGVLDIAGFEIFD.NTFEQLCINFTNEKLQQFF
RetrocopyVYYALGALAKSVYEKMFNWMVVRINQSLDTKQHRQYFIGVLDIAGFEIFDYNTFEQLCINFTNEKLQQFF
ParentalNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKASDATFKAKLYDNHLGK
NHHMFVLEQEEYKKEGI.W.FIDFGMDLQACIDLIEKP.GI.SILEEECMFPKASD.TFK.KLYDNHLGK
RetrocopyNHHMFVLEQEEYKKEGIDWEFIDFGMDLQACIDLIEKPLGILSILEEECMFPKASDQTFKSKLYDNHLGK
ParentalSANFQKPRIVKGKPEAHFALMHYAGTVDYNINNWLVKNKDPLNETVVALYQKSNLKLLSILFANYSGADA
...F.KPR..KGK.EAHFAL.HYAGTVDYNI.NWLVKNKDPLNETVV.LYQKS.LKLLS.LF...S....
RetrocopyNKMFEKPRAAKGKAEAHFALVHYAGTVDYNITNWLVKNKDPLNETVVGLYQKSSLKLLSVLFSTFSSDSS
ParentalAMTEGTEGKKEKKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMENPLVMHQLRC
....G..G.K.K...GSSFQTVSALHRENLNKLMTNL..THPHFVRC.IPNE.KTPG.M.N.LVMHQLRC
Retrocopy--DKGGKGAKKK---GSSFQTVSALHRENLNKLMTNLKTTHPHFVRCLIPNERKTPGVMDNCLVMHQLRC
ParentalNGVLEGIRICRKGFPNRILYGDFKQRYRILNPAAIPEGQFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFF
NGVLEGIRICRKGFPNR.LYGDFKQRYRILN..AIPEGQFID..K.AEKLLGSLDIDH.QY.FGHTKVFF
RetrocopyNGVLEGIRICRKGFPNRVLYGDFKQRYRILNASAIPEGQFIDCKKSAEKLLGSLDIDHTQYRFGHTKVFF
ParentalKAGLLGLLEEMRDERLSKIITAIQARSRGLLSRIEYQKIVERRDALLVIQWNVRAFMGVKNWPWMKLYFK
KAGLLG.LEEMRDE.LS.I.T.IQA..RG.L.R....K..ERRDAL.VIQWN.R.F.GVKNWPWMKL.FK
RetrocopyKAGLLGTLEEMRDEQLSRILTRIQANARGILMRVQFAKLLERRDALMVIQWNLRSFLGVKNWPWMKLFFK
ParentalIKPLLRSAEAEKEMANMKEEFLKLKEAFAKSEARRKELEEKMVTLLQEKNDLQLQVQAEQDNLCDAEERC
IKPLL.SAEAEKEMA.MK.EF.KLKEA..KSE.RRKELEEK.VTLLQEKNDL.LQ.Q.EQD.L.DAEERC
RetrocopyIKPLLKSAEAEKEMASMKDEFNKLKEALEKSETRRKELEEKIVTLLQEKNDLTLQIQSEQDTLTDAEERC
ParentalEGLIKNKIQLEAKSKELTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
E.LIK.KIQLEAK.KE.TERLEDEEE.NA.LTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
RetrocopyEQLIKSKIQLEAKLKEITERLEDEEEINADLTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKV
ParentalKNLTEEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKIR
KNLTEEMA..D..I.KLTKEKKALQE.HQQTLDDLQSEEDK.N.LTKAK.KLEQQVDDLEGSLEQEKK.R
RetrocopyKNLTEEMASQDDNIMKLTKEKKALQEVHQQTLDDLQSEEDKANSLTKAKAKLEQQVDDLEGSLEQEKKVR
ParentalMDLERAKRKLEGDLKLTQETVMDLENDKQQLEERLKKKDFEISQLNGKIEDEQAIIIQLQKKLKELQARV
MD.ER.KRKLEGD.KL.QE..MDLENDKQQLEE.LKKKDFE..Q.N...EDEQ....QL.KK.KE.QAR.
RetrocopyMDIERSKRKLEGDFKLMQESLMDLENDKQQLEEKLKKKDFETVQMNSRLEDEQVSTNQLHKKVKESQARI
ParentalEELEEELEAERAARAKVEKQRADLARELEEISERLEEAGGATTLQIEMNKKREAEFLKLRRDLEEATLQH
EELEEEL.AERAARAKVEKQR.DL.RELE.ISERLEEAGGAT..Q.E.NKKR..EF.KLRR.LEE.TLQH
RetrocopyEELEEELDAERAARAKVEKQRSDLSRELEDISERLEEAGGATSAQVELNKKRDSEFQKLRRELEESTLQH
ParentalEATAAALRKKQADSVADLGEQIDNLQRVKQKLEKEKSELRLELDDVVSNMEQIVKSKTNLEKTCRTLEDQ
E.TAA.LRKK.ADSVA.LGEQIDNLQRVKQKLEKEKSEL.LELDD..SNME...K.K.N.EK.CR..ED.
RetrocopyESTAASLRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKLELDDLCSNMETVIKAKSNMEKMCRAMEDS
ParentalMNDYRSKCDEYQRTIHDFTTQKAKLQAENDEFTRQADDKESLISQLTRGKNSYTQQLEDIKRQLEEEVKA
MN.Y..K.DE.QR.I.D.TTQ.AK...EN.E..R....KE.LISQLTR.K.SY.QQ.ED..RQLEEEVKA
RetrocopyMNEYKNKQDEAQRAISDLTTQRAKFLTENGELGRRLEEKECLISQLTRAKMSYNQQVEDLRRQLEEEVKA
ParentalKNALAHALQSARHDCDLLREQYEEEQEAKAELQRSMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQ
KNALAHA.QSARHDCDLLREQ.EEEQEAKAELQR..SK.N.EV..WRTKYE.D.IQR.EELEEAKKKL.Q
RetrocopyKNALAHAVQSARHDCDLLREQFEEEQEAKAELQRALSKSNTEVSTWRTKYESDGIQRMEELEEAKKKLVQ
ParentalRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKVLAEWKQKYEECQC
RLQEAEEA.EAVNAKCSSLEKTKHRLQNEIEDLM.D.ER.NAA.AALDKKQR.FDK..AEWKQK.EE.QC
RetrocopyRLQEAEEAIEAVNAKCSSLEKTKHRLQNEIEDLMLDLERANAASAALDKKQRSFDKIMAEWKQKFEESQC
ParentalELESSQKEARSLSTELFKLKNSYEESLDQLETVKRENKILQEEISDLTEQLGEGGKTIHELEKVRKQLEQ
ELE.SQKEARSLSTELFKLKN.YEE.L.QLET.KRENK.LQEEISDLT.QLGEGG...HEL.K.RKQLEQ
RetrocopyELEASQKEARSLSTELFKLKNAYEECLEQLETTKRENKNLQEEISDLTDQLGEGGRSAHELDKMRKQLEQ
ParentalEKTEIQSALEEAEASLEHEEGKILRAQLEFTQIKAEMERKLAEKDEEMEQSKRNLQRTIDTLQSSLEAEC
EK.E.Q.ALEEAE.SLEHEE.KILR.QLEF.Q.KA.MERKL.EKDEEMEQ.KRN.QR..D.LQSSLE.E.
RetrocopyEKSELQTALEEAEGSLEHEESKILRSQLEFNQVKADMERKLSEKDEEMEQAKRNYQRMLDSLQSSLESET
ParentalRSRNEALRLKKKMEGDLNEMEIQLSQANRQAAEAQKQLKSVHAHLKDCQIQLDESMRANDEMKENIAIVE
RSRNEALRLKKKMEGDLNEMEIQLSQANRQAA.AQKQ.K......KD.Q.QLD....AND.M.EN.A..E
RetrocopyRSRNEALRLKKKMEGDLNEMEIQLSQANRQAADAQKQIKNLQTFMKDLQMQLDDAHHANDDMRENTALLE
ParentalRRNNLLQAEVEELRAALEQTERSRKLAEQELLDVSERVQLLHSQNTALINQKKKLEVDASQLQTEVEEAV
RR.NL.QAE.EE.RAA.EQTER.RKLAEQEL.D..ER.QLLHSQNT.L.NQKKK.E.D..QLQTE.EEA.
RetrocopyRRHNLIQAELEEVRAAFEQTERTRKLAEQELTDITERMQLLHSQNTSLLNQKKKHEADLLQLQTETEEAI
ParentalQECRNAEDKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKL
QE.RNAE.KAKKAI.DAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQ.AMKGGKKQ.QKL
RetrocopyQENRNAEEKAKKAINDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQVAMKGGKKQLQKL
ParentalEARVRELENEVESEQKKSTEAAKGIRKYERRIKELTYQTEEDRKNVARLQDLVDKLQLKIKSYKRVAEEA
E.R..ELE.E.E.EQ.K..E..KGIRKYERR.KELTYQTEEDRKN.ARLQ.LVDKLQLK.KSYKR.AEEA
RetrocopyETRIKELESELEAEQRKGIESIKGIRKYERRLKELTYQTEEDRKNMARLQELVDKLQLKVKSYKRAAEEA
ParentalEEQANVHLGKFRKLQHELDEAEERADIAESQVNKLRIKSRDTGSKKGFD
EE..N....K.RKLQHEL.EAEERADIAESQVNKL..K.RD...KKG.D
RetrocopyEEAGNANMAKLRKLQHELEEAEERADIAESQVNKLKAKTRDGSTKKGLD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Takifugu rubripes was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Takifugu rubripes was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_trub_5 retrocopy.

TSS - click to see more details

Takifugu rubripes was not studied using FANTOM5 data.

Lab - click to see more details

retro_trub_5 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_trub_5 has 0 orthologous retrocopies within teleost group .

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Gadus morhua ENSGMOG000000093871 retrocopy
retro_gmor_5,
Takifugu rubripes ENSTRUG00000007797 1 retrocopy
retro_trub_5 ,


Copyright © RetrogeneDB 2014-2017