RetrogeneDB ID: retro_tsyr_1005

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_273630:680..1146(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZWINT
• Ensembl ID: ENSTSYG00000010283
• Aliases: None
• Description: ZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:13195]

Sequence

>retro_tsyr_1005
GCCCTGACCCAGGTCTTGACAAAAGCGGAAAAGGCCCAAAGGAAGCAGACACAGCTCAAGGAAGCCTTTGAGCAGCTCCG
GGCCAAGAAGCAAATGGTCATGGAGAGACTTAGAGCAGCCCAGAAGCAGTGGCAGCTGCAACAGGAGAAGCATCAACAAC
CTTTGGTGGAGGTTTTGGCAGAGGTGAGGGAGCATCAAAACAGGAACTCAGTGGGAGCTTGAGCAGCTGTATCAGAAACT
TGGAACCCTAAAGCAGCAGGTAGGACAGGAGCAGGGCAAGCTGCAGAGGCACCAGACCTTCCTCCAGCTGCTGTATACCC
TACAGGACAAGCTTCTGTTCCCTAAGACAGAGGCAGAGCTACCTCTGGAGCTGGGTCTCCCTGAGGATAAGCCACAGCAA
TTGACCCAATCCCAGGAGCAGACAGGGGACACCATGGGGGGAGATGATGGTGTGTCCTCTAAGTCT

Alignment

ORF - retro_tsyr_1005 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.79 %
• Parental protein coverage: 54.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ALTQVLMKTEEAQRKQTQLKEVLEQLQAKKQMAMEKLRAAQKKWQLQQEKHQQRLAEVLAEVRERQ-TGT
          ALTQVL.K.E.AQRKQTQLKE..EQL.AKKQM.ME.LRAAQK.WQLQQEKHQQ.L.EVLAEVRE.Q.TGT
Retrocopy ALTQVLTKAEKAQRKQTQLKEAFEQLRAKKQMVMERLRAAQKQWQLQQEKHQQPLVEVLAEVREHQ>TGT

Parental  QQKLEHLHQELGTLKQQAGQEQEKLQRHQIFLRLLYTLQDK---AEAELQQELDL--PEDKPQHLIQPQK
          Q..LE.L.Q.LGTLKQQ.GQEQ.KLQRHQ.FL.LLYTLQDK......E....L.L..PEDKPQ.L.Q.Q.
Retrocopy QWELEQLYQKLGTLKQQVGQEQGKLQRHQTFLQLLYTLQDKLLFPKTEAELPLELGLPEDKPQQLTQSQE

Parental  QTEDTMGRDNGVSAKA
          QT.DTMG.D.GVS.K.
Retrocopy QTGDTMGGDDGVSSKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1005 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002655	1 retrocopy	retro_btau_239,
Echinops telfairi	ENSETEG00000007793	1 retrocopy	retro_etel_261,
Mus musculus	ENSMUSG00000019923	3 retrocopies	retro_mmus_1488, retro_mmus_2611, retro_mmus_997,
Rattus norvegicus	ENSRNOG00000048682	2 retrocopies	retro_rnor_1211, retro_rnor_1306,
Tarsius syrichta	ENSTSYG00000010283	1 retrocopy	retro_tsyr_1005 ,
Tursiops truncatus	ENSTTRG00000002204	1 retrocopy	retro_ttru_1193,