RetrogeneDB ID: | retro_tsyr_1284 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_38056:1533..1999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MYL1 | ||
Ensembl ID: | ENSTSYG00000007599 | ||
Aliases: | None | ||
Description: | myosin, light chain 1, alkali; skeletal, fast [Source:HGNC Symbol;Acc:7582] |
Percent Identity: | 51.59 % |
Parental protein coverage: | 83.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IDLSSIKIEFSKEQQDDFKEAFLLFDRTGESKITLSQVGDVLRALGTNPTNAEVRKVL-GNPSNEEMNAK |
....S...E........FKEAF.LFD.T...KI.....GDV....G.NPTN.EV.KVL.G.P...EMN.K | |
Retrocopy | LESESLLQEKDPHKSAEFKEAFQLFDETKDGKILYNLCGDVMKLQGQNPTNTEVLKVL>GTP-RDEMNVK |
Parental | KIEFEQFLPMMQAISNNKDQGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMKGQE |
....E.FLPM.Q....NKDQGT.ED.V..L..FDKEGNGT.M..E..HV..TLGEKM.EEEV..LM.G.. | |
Retrocopy | VLDVEHFLPMLQTVAKNKDQGTFEDYVKRLWTFDKEGNGTDMLTEIWHVPVTLGEKMIEEEV*VLMAGYK |
Parental | DSNGCINYEAFVKHIMS |
D.NGCIN.E..V..... | |
Retrocopy | DGNGCIN*EELVCMVLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008609 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000006905 | 5 retrocopies | |
Mus musculus | ENSMUSG00000061816 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002568 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007599 | 3 retrocopies |
retro_tsyr_1284 , retro_tsyr_1539, retro_tsyr_2003,
|