RetrogeneDB ID: | retro_tsyr_1331 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_401032:356..1210(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KRT84 | ||
| Ensembl ID: | ENSTSYG00000006538 | ||
| Aliases: | None | ||
| Description: | keratin 84 [Source:HGNC Symbol;Acc:6461] |
Retrocopy-Parental alignment summary:
>retro_tsyr_1331
ATTCCAGCCATCACCGTGAACTAGAGGCTGCTGAGTCCCCTTAAGCTGGAGGTGCACCCCAACATCCAGGCTGTGCGCAC
CCAGGAGAAGGAGCAGATCAGGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCTTGGAGCAGCAAA
ACAAGGTGCTGGAGACTAAGTGGAGCCTCCTGCAGCAGAAGACAGCCCGCAGCAACATGGACAACATGTTCAATAGATAC
ATCAACAGCCTCTGGCGGCAGCCAGACACACTGGGCCAGGAGAAACTGAAGCTGGAGGCCGACCTGGGCAACATGCAGGG
CCTGGTGGAGAACACCAAGAACAAGTACGAGGATGAAATCAACAAGCGCACAGAGATGGAGAGTGAATTCCTCCTCATCA
AGAAGGATGTGGATGAAGCTTACATGAACGAGGTGGAGCTGGAGCTTGCCTGGAGGGGCTGACTGATGAGACCAACCTCC
TCAGGCAGCTGTATGAGGAGGAGATCCGTGAACTGCAGTCCCAGATCTCAGACACATCTGTGTTCTTGTCCATGGACAAC
AGCTACTCCCTGGACATGGACGGCATCATCGCCGAGGTCCACGCCCAGTACGAAGAGATTGCCAACCACAGCCGGGCCCT
GGCTGAGAGCATGTACCAGACCAAGTATGAGGAGCTGTAGACGCTGGTCGGGAAGCACTGGGATGACCTGCGCCGCACCA
AGACGGAGATCTCCAAGATGAACCAGAACATCAGCCAGCTGCAGGCTGAGATCGAGGGTCTCAAAGGCCAGAGGGCTTCC
CTGGAGGCCGCCATCGCAGCCGCAGAGCAGCGTGGGGAGATGGCCGCTAAGGAC
ORF - retro_tsyr_1331 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.4 % |
| Parental protein coverage: | 58.73 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | ITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQEQKRV |
| I.A.TVN..LL.PL.LE..PN.Q.V...EKEQI.TLNNKFASFIDKVRFLEQQNK.LETKWS.LQ.QK.. | |
| Retrocopy | IPAITVN*RLLSPLKLEVHPNIQAVRTQEKEQIRTLNNKFASFIDKVRFLEQQNKVLETKWSLLQ-QKTA |
| Parental | RSNLEPLFEGYISTLRRELEVQVSDQARLQAERNHMQDVLEGFKKKYEEEVVLRANAENEFVALKKDVDT |
| RSN....F..YI..L.R...........L.A....MQ...E..K.KYE.E...R...E.EF...KKDVD. | |
| Retrocopy | RSNMDNMFNRYINSLWRQPDTLGQEKLKLEADLGNMQGLVENTKNKYEDEINKRTEMESEFLLIKKDVDE |
| Parental | AFLSKSDLE-ANMEALIQEIDFLKTLYMEEIQLLQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVA |
| A......LE.A..E.L..E...L..LY.EEI..LQS.IS.TSV...MDNS..L..DGIIAEV.AQYEE.A | |
| Retrocopy | AYMNEVELE<ACLEGLTDETNLLRQLYEEEIRELQSQISDTSVFLSMDNSYSLDMDGIIAEVHAQYEEIA |
| Parental | RRSRADAEAWYQTKYEEMQVTAGQHCDNLRNTRNEINELTRLIQRLKAEIEHAKAQRAKLEAAVAEAEQQ |
| ..SRA.AE..YQTKYEE.....G.H.D.LR.T..EI......I..L.AEIE..K.QRA.LEAA.A.AEQ. | |
| Retrocopy | NHSRALAESMYQTKYEEL*TLVGKHWDDLRRTKTEISKMNQNISQLQAEIEGLKGQRASLEAAIAAAEQR |
| Parental | GEVALND |
| GE.A..D | |
| Retrocopy | GEMAAKD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1331 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000006538 | 3 retrocopies |
retro_tsyr_1195, retro_tsyr_1331 , retro_tsyr_929,
|