RetrogeneDB ID: | retro_tsyr_1657 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_533166:0..725(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GORASP2 | ||
Ensembl ID: | ENSTSYG00000014516 | ||
Aliases: | None | ||
Description: | golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 54.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | CGIGYGYLHRIPTRPFEEGKKISLPGQMTGTPITP-LKDGFTEVQLSSVNPPSLSPPGSTGIEQNLSGLS |
CGIGYGYLH.I.T.PFEE..K.SLPGQMT...I.P.LK.G....Q.S..N..SLSPPG.TGIE..LS.LS | |
Retrocopy | CGIGYGYLH*ISTCPFEEENKNSLPGQMTSMFIMP>LKMG---LQRSNCNALSLSPPGTTGIEESLSVLS |
Parental | ISSTPAVSNVLSTEVPTVPLLPAQVN--LKCMPPMNPSTTLPGLMPLPAGLPNLPSLPNLNLPAPHIMPG |
.SSTPAVSN.LST.VPTVPLLP..VN..L...PPM.P.T.LPGL.PL.AGLPNLPSL..LNL..PHIMP. | |
Retrocopy | VSSTPAVSNILSTGVPTVPLLPS*VNQSLTPVPPMKPATILPGLLPLSAGLPNLPSLLTLNLLIPHIMPR |
Parental | VGLP-ELVNPGLPPLPSLPPR-NLPGIAPLPMPSEFL--PSFP-LVPEGSPAANSGDLL-SLPPTGSPPS |
.GL..EL.N.GL.PLP.LPP..N.PG.AP......F...P..P.LVPE.SPAA.SG..L.SLP.TGSPPS | |
Retrocopy | IGLL>ELINLGLLPLPALPPE<NFPGVAPFLFSHAFQVPPFIP>LVPEDSPAASSGRVLPSLPFTGSPPS |
Parental | NPVTTTTKAEVAFSVTVDVTPQPKASATKDRISYSAPASEKP |
NPV.T..KA....S.T.DVT.QP..S.T..R....A.ASE.P | |
Retrocopy | NPVATIAKAHATSSLTADVTLQP--SLTPHR--HTANASESP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007263 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000812 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007686 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014516 | 1 retrocopy |
retro_tsyr_1657 ,
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