>retro_tsyr_1987
AAACATGATAATGTACTCTCTGCCCTTGACATACTCCAACCTCCACACATTGACTATTTTGAGGAAATATATGTTGTCAC
AGAATTGATGCAAAATGACCTACATAAAATTATCATTTCTCCTCAACCACTCAGCTTAAATCATGTCCAAGTTTTTCTTT
ATCAGATTTTGCGAGGTTTGAGCTATCTCCATTCAGCTGTCATTTTACATCAAGACATTAATCCAGGGAATCTCCTTATG
AACAGCAACTGTATTCTAAAGATTTGTGATTTTGGATTGGCCAGAGTGGAAGAATTAGATAAATCCCGTCATATGACTCA
GCAAGTTGTCACTCTGTATTATAGGGCTCCGGAAATCCTGATGGGTAACCATCATCACAGCAATGCTATTGACATCTGGT
CTGTCAGATGTATCTTTGCAGAACTATTAGGATGAAGAATATTGTTTCAGGCACAGAGTCCCATTCAGCAGTTGGATTTG
ATCACGGATCTGTTGGGCACACCATCACTGGAAGCAATGAGGACGGCTTGTGAAGGTGCTGAGGCACATATACTCAGGGG
TCCTCATAAACAGCCATCTCTTTCTGTACCCTATACCCTGTCTAGCCAGGCTACTCACGAAGCTGTTCGCAAGATGTTGG
TCTTTGATCCATCCAAAAGAATATCCACTAAGAATATGCCTTAGCCCACCCCTACCTAGATGAAGGGTGACTACCCTATC
ACACATGTATGAATAAATGTTGCTTTTCCACCTCTACTGGAAGAGTTTATACCAGTGACTTTGAGCCCATCACAAATCCC
AAATATGATGACACTTTTGAGAAGAACCTCGGTTCTGTCCGACAGGTTAAAGAAATTATTCACCAGTTCATTTTGGAACA
GCAGGAAGGAAACAGAGTACCTTTCTGCATCAACCCTCAGTCTGCTGCTTTTAAGAGCTTTATTAGTTCCACTGTTGCTC
AACTCCCTGAGATACCCCCATCTCCTCTGGTGTGGGAG
ORF - retro_tsyr_1987 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.94 % |
Parental protein coverage: |
63.57 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KHDNVLSALDILQPPHIDYFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILH |
| KHDNVLSALDILQPPHIDYFEEIYVVTELMQ.DLHKII.SPQPLS..HV.VFLYQILRGL.YLHSA.ILH |
Retrocopy | KHDNVLSALDILQPPHIDYFEEIYVVTELMQNDLHKIIISPQPLSLNHVQVFLYQILRGLSYLHSAVILH |
|
Parental | RDIKPGNLLVNSNCVLKICDFGLARVEELDESRHMTQEVVTQYYRAPEILMGSRHYSNAIDIWSVGCIFA |
| .DI.PGNLL.NSNC.LKICDFGLARVEELD.SRHMTQ.VVT.YYRAPEILMG..H.SNAIDIWSV.CIFA |
Retrocopy | QDINPGNLLMNSNCILKICDFGLARVEELDKSRHMTQQVVTLYYRAPEILMGNHHHSNAIDIWSVRCIFA |
|
Parental | ELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRTACEGAKAHILRGPHKQPSLPVLYTLSSQATHEAVH |
| ELLG.RILFQAQSPIQQLDLITDLLGTPSLEAMRTACEGA.AHILRGPHKQPSL.V.YTLSSQATHEAV. |
Retrocopy | ELLG*RILFQAQSPIQQLDLITDLLGTPSLEAMRTACEGAEAHILRGPHKQPSLSVPYTLSSQATHEAVR |
|
Parental | LLCRMLVFDPSKRISAKD-ALAHP-YLDEGRLRYHTCMCKCCFSTSTGRVYTSDFEPITNPKFDDTFEKN |
| ....MLVFDPSKRIS.K...L..P.YLDEG.L.YHTCM.KCCFSTSTGRVYTSDFEPITNPK.DDTFEKN |
Retrocopy | ---KMLVFDPSKRISTKN>CLSPP>YLDEG*LPYHTCMNKCCFSTSTGRVYTSDFEPITNPKYDDTFEKN |
|
Parental | LSSVRQVKEIIHQFILEQQKGNRVPLCINPQSAAFKSFISSTVAQPSEMPPSPLVWE |
| L.SVRQVKEIIHQFILEQQ.GNRVP.CINPQSAAFKSFISSTVAQ..E.PPSPLVWE |
Retrocopy | LGSVRQVKEIIHQFILEQQEGNRVPFCINPQSAAFKSFISSTVAQLPEIPPSPLVWE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1987 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.