RetrogeneDB ID: retro_tsyr_30

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_472225:11..1148(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000005768
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RCBTB2
• Ensembl ID: ENSTSYG00000007199
• Aliases: None
• Description: regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:HGNC Symbol;Acc:1914]

Sequence

>retro_tsyr_30
TTTGGGAATGGGACCACCAACCAAGGCATTGCTCCCATCCAAGTCTGTACCAACCTCTTGATCAAGCAAGTGGTTGAAGT
CGCTTGTGGCTCCCATCATTCAATGGCTCTGGCAGCTGACGGAGAGGTATTTGCTTGGGGCTATAATAACTGTGGCCAAG
TGGGATCAGGATCTACAGCAAATCAGCCAACTCCTCGAAAAGTTACAAACTGTTTGCATATTAAGAGAGTGGTTGGCATT
GCCTGCGGTCAGACCTCGTCCATGGCTGTTCTGGACAATGGTGAGGTATATGGCTGGGGTTACAACGGCAATGGTCAGCT
GGGCTTGGGCAATAATGGCAACCAGCTGACGCCTGTGAGAGTGGCAGCTTTGCACAGTGTGTGTGTGAACCAGATTGTCT
GCGGCTATGCACATACCCTAGCACTAACAGATGAGGGCTTGCTCTATGCCTGGGGAGCTAACACATATGGGCAGCTGGGA
ACTGGCAATAAAAATAACCTGCTAAGCCCAGCACACATCATGGTGGAGAAAGAAAGGGTAGTGGAGATCGCAGCCTGTCA
CTCTGCCCATACGTCTGCTGCCAAGACCCAAGGTGGGCATGTGTATATGTGGGGCCAGTGCCGAGGCCAGTCGGTGATCC
TCCCTCATCTCACCCACTTTTCCTGCACGGACGATGTGTTCGCCTGCTTCGCCACCCCTGCTGTCTCGTGGCGCCTCCTC
TCTGTGGAGCATGAAGACTTTTTAACAGTCGCAGAGTCACTGAAGAAAGAATTTGATAGTCCAGAAACTGCTGATCTGAA
GTTTCAAATTGATGGGAAATATATTCATGTCCATAAAGCTGTTTTGAAAATCAGGTGTGAGCACTTTCGATCCATGTTCC
AGTCATATTGGAATGAGGATATGAAGGAAGTGATAGAAATCGACCAATTTTCTTACCCAGTGTATCGTGCCTTTCTCCAG
TACCTCTACACAGACACCGTTGACCTGCCGCCAGAAGATGCTATAGGTCTTTTGGATTTGGCGACATCTTATTGTGAAAA
CAGACTGAAAAAACTTTGTCAGCACATTATCAAGCGAGGAATTACTGTGGAGAATGCCTTTTCATTATTCTCTGCTGCAG
TCCGATATGATGCGGAG

Alignment

ORF - retro_tsyr_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.62 %
• Parental protein coverage: 55.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GNGTTNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQAIPRRVTGC
          GNGTTN.G..P....TNL..KQV.EVACGS.HS..L..DGEVFAWGYNN.GQVGSGST.NQ..PR.VT.C
Retrocopy GNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNC

Parental  LQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIHVQKVACGYAHTLV
          L..K.V..IACGQ..SMAV.D.GEVY.WGYNGNGQLGLG..GNQ.TP.RVAAL....V....CGYAHTL.
Retrocopy LHIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLA

Parental  LTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVIVEKDRVIEIAACHSAHTSAAKTQGGHVYMWGQCRGQS
          LTDEG..YAWGAN.YGQLGTGNK.N...P....VEK.RV.EIAACHSAHTSAAKTQGGHVYMWGQCRGQS
Retrocopy LTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQS

Parental  VILPHLTHFSCTDDVFACFATPAVSWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVL
          VILPHLTHFSCTDDVFACFATPAVSWRLLSVE..D.LTVAESLK.EFD.P.TADLKF..DGKYI..HK..
Retrocopy VILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFQIDGKYIHVHKAV

Parental  LKI
          LKI
Retrocopy LKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_30 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000007469	1 retrocopy	retro_ogar_704,
Tarsius syrichta	ENSTSYG00000007199	1 retrocopy	retro_tsyr_30 ,