>retro_tsyr_562
AACATCCTGAAAGAACTCATAAAGCCTTTCACTATCCTTGGAACAGTTGTCAACACCATCATGGGAAGCACCAATGTGGG
TGACCAACTTCCCACTGGACAGCTGTCAGTGGTGCCTTGGCGATGGACTGGGGTGAAATATACCAACAATGAGACCTATT
TTGATGTGATTGAAGAGATTGATGCCAACATTGATAAATTAGTTTCTACAATTACTGCTGAGTTCCAGGGGGTGATTGAT
ACCTATGACAAGCTGACTGGAATGCCAGAACTTACACTTTCCTTCATGAAGCCCAGGTTGTTGGATGACATTAGCTTGCA
TCCTTTTGTTCATTTCAAGCACTGGGAATCTGAGCAGATCCTCTCCTTCATCCCTCCTGTTGGAAACTTCCACCTGCTCT
ATTACCATGTCAGTGCACAGAATCTGGTTGCAATTCCATTGTATGTCAAACATAATATCAGTTTCCAGGATAGTAGTTCA
CTTGGATACTTTGAAATAACAGTGGGATCCACGTAAACTATGGGGAAGACCATAGAGGGAGTGACTGTCACCAGCCAGAT
GCCCAAAGGAGTCCTGAACATGAGTCTTGCTCCATCTCAGGGGATGCACACGTTTGACCCAGTTACAAAGATGCTCTCTT
GCTATATGAGAAAAATAAATCCCCAAAAGCTACCGAGTTTGAAGGGGACCATGAGTCTTTAGGCTGGAGCTTCCAAACTA
AATGAAAACTCCACAATTAATCTGCAGTTTAAGATCTAGCAGCTGGCCATTTCTGGACTCAAAGTGAATCGTCTGGATAT
GTATGGAGAAAAGTACAAATCCTTCAAGGACATAAAATATATGATCAAAGCTGAAAAGTTCCAAGTTCGAACC
ORF - retro_tsyr_562 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.54 % |
Parental protein coverage: |
69.62 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGST |
| NILKELIKP.TIL.TVVNTI.GSTNVGDQLPTGQLSVVPWR.TGVKYTNNE.YFDVIEEIDA.IDK..ST |
Retrocopy | NILKELIKPFTILGTVVNTIMGSTNVGDQLPTGQLSVVPWRWTGVKYTNNETYFDVIEEIDANIDKLVST |
|
Parental | ITAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQ |
| ITAE.QGVID...KLTGMP.LTLSFM.PRLLDD.S.HP.V.FK.WESE.ILSFIPP.GNF.LL.YHVSAQ |
Retrocopy | ITAEFQGVIDTYDKLTGMPELTLSFMKPRLLDDISLHPFVHFKHWESEQILSFIPPVGNFHLLYYHVSAQ |
|
Parental | NLVAIPVYVKHNISFRDSSSLGRFEITVGPKQTMGKTIEGVIVTSQMPKGVLNMSLTPSQGTHTFDPVTK |
| NLVAIP.YVKHNISF.DSSSLG.FEITVG...TMGKTIEGV.VTSQMPKGVLNMSL.PSQG.HTFDPVTK |
Retrocopy | NLVAIPLYVKHNISFQDSSSLGYFEITVGST*TMGKTIEGVTVTSQMPKGVLNMSLAPSQGMHTFDPVTK |
|
Parental | MLSWDIGKINPQKLPSLKGTMSLQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKY |
| MLS....KINPQKLPSLKGTMSL.AGASK..EN.TINLQFKI.QLAISGLKVNRLDMYGEKYK.FK.IKY |
Retrocopy | MLSCYMRKINPQKLPSLKGTMSL*AGASKLNENSTINLQFKI*QLAISGLKVNRLDMYGEKYKSFKDIKY |
|
Parental | MTKAGKFQVRT |
| M.KA.KFQVRT |
Retrocopy | MIKAEKFQVRT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_562 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.