RetrogeneDB ID: retro_tsyr_571

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_142076:3683..4613(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRT36
• Ensembl ID: ENSTSYG00000013056
• Aliases: None
• Description: keratin 36 [Source:HGNC Symbol;Acc:6454]

Sequence

>retro_tsyr_571
AGCGAGAAGGAGACCATGCAGGAGCTGAACGACCGCCTGGCCTCCTACCTGGAGAGAGTGAGGAGCCTGGAGACCGAGAA
CTGGAGGTTAGAGAGCAAAATCCGGGAGCACCTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGGAACATTATTTCAAGA
CCATCGAGGACCTGAGGGCTCAGATCTTTGCAACTTCTGTGGACAATGCCCGCGTCGTTCTGCAGATAGACAATGCCCGT
CTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCACGCGCCAGTCCGTGGAGAGCGACATCCATGGGCT
CTGCAAGGTCATCGATGACACCAATGTCACCCGGCTGCAGCTGGAGACAGAGATCGAGGCCCTCAAGGAAGAGCTGCTCT
TCATGAAGAATCATGAGGAGGAAGTAAAAGGCCTACAAGCGCAGATTGCCAGCTCTGGGTTGACCGTGGAGGTAGATGCC
CCCAAATCTCAGGACCTCAGCAAGATCATGGCAGACATCCGGGCCCAGTATGATGAGCTGGCTCAGAAGAACCGAGAGGA
GCTGGACAAGTACTGGTCGCAGCAGATTGAGGAGAGCACCACAGTGGTCACCACGCAGTCTGCTGAGATTGGAGCTGCAG
AGATGACGCTCACAGAGCTGAAACGTACAGCGCAGTCCTTGGAGATTGACCTGGACTCCATGAGAAACCTGAAGGCCAGC
TTGGAGAGCAGCCTGAGAGAAGCGGAGACCCGCTACACCATGCAGATGGAGCAGCTCAATGGCAACCTGCTGCACCTGGA
GTCTGAGCTGGCACAGACCCGGAGAGAGGGCCAGCGCCAGGCCCAGGAGTACAAGTCCCTACTGAACATCAAGGTCAAGC
TGGAGGCTGAGATAGCCACCTACCGCCGCCTACTAGAAGATGGAGAAGAC

Alignment

ORF - retro_tsyr_571 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.64 %
• Parental protein coverage: 76.92 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SEKETMQFLNDRLASYLEKVRQLERENAELEGRIREWYESQIPYICPDYQSYFKTIEDFQQKILLTKSEN
          SEKETMQ.LNDRLASYLE.VR.LE.EN..LE..IRE..E...P....D...YFKTIED....I..T...N
Retrocopy SEKETMQELNDRLASYLERVRSLETENWRLESKIREHLEKKGPQV-RDWEHYFKTIEDLRAQIFATSVDN

Parental  ARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKADLETQVESLKEELMCLKKNH
          AR.VLQIDNA.LAADDFR.KYETEL..RQ.VE.DI.GL....D........LET..E.LKEEL...K.NH
Retrocopy ARVVLQIDNARLAADDFRVKYETELATRQSVESDIHGLCKVIDDTNVTRLQLETEIEALKEELLFMK-NH

Parental  EEEVSALRCQLGDR-LNVEVDAAPPVDLNKILDDMRCQYETLVENNHRDVEAWFNTQTEELNQQVVSSSE
          EEEV..L..Q.....L.VEVDA....DL.KI..D.R.QY..L...N..........Q.EE....V...S.
Retrocopy EEEVKGLQAQIASSGLTVEVDAPKSQDLSKIMADIRAQYDELAQKNREELDKYWSQQIEESTTVVTTQSA

Parental  QLQCCQTEIIELRRTVNALEIELQAQQSMRNSLESTLAETEARYSSQLAQMQGLIGNVEAQLAEIRCDLE
          ..........EL.RT...LEI.L........SLES.L.E.E.RY..Q..Q..G.....E..LA..R....
Retrocopy EIGAAEMTLTELKRTAQSLEIDLDSMRNLKASLESSLREAETRYTMQMEQLNGNLLHLESELAQTRREGQ

Parental  RQNQEYQVLLDVKARLENEIATYRRLLE-GED
          RQ.QEY..LL..K..LE.EIATYRRLLE.GED
Retrocopy RQAQEYKSLLNIKVKLEAEIATYRRLLEDGED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_571 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000013056	1 retrocopy	retro_tsyr_571 ,
Tarsius syrichta	ENSTSYG00000014310	1 retrocopy	retro_tsyr_902,