RetrogeneDB ID: | retro_tsyr_615 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_151300:2988..3919(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AIFM1 | ||
Ensembl ID: | ENSTSYG00000000060 | ||
Aliases: | None | ||
Description: | apoptosis-inducing factor, mitochondrion-associated, 1 [Source:HGNC Symbol;Acc:8768] |
Percent Identity: | 81.01 % |
Parental protein coverage: | 51.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VKSITIIGGGFLGSELACALGRKAQALGTEVIQLFPEKGNMGKILPEYISNWTMEKVRREGVKVMPNAIV |
...ITIIGGGFLGSELAC.LGRKA.A.GTEVIQLFPEKGN.GKILPEY.SN.TMEK...EGVKVMPNAIV | |
Retrocopy | LQNITIIGGGFLGSELACSLGRKARAMGTEVIQLFPEKGNIGKILPEYLSN*TMEKI**EGVKVMPNAIV |
Parental | QSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAG-D |
QSVGVSG.KL.IKLKD..KVETDHIVAAVGLE.N.EL.KTGGLEIDSDFGGF.VNAELQA.SNIW.AG.D | |
Retrocopy | QSVGVSGSKLFIKLKDCSKVETDHIVAAVGLEANAELVKTGGLEIDSDFGGFWVNAELQAHSNIWGAG<D |
Parental | AACFYDIKLGRRRVEHHDHAVVSG-RLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGV |
A.CFYDIKLG..R...H....V...R..G....G..K.YWHQSMFWSDLGP.VGYEAIGLVD.SLPTVGV | |
Retrocopy | AECFYDIKLG-KRRVEHHDHAVVS<RKIGWGKLGVVKLYWHQSMFWSDLGPNVGYEAIGLVDNSLPTVGV |
Parental | FAKATAQDNPKSATEQSGTGIRSESETESEASEIAIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIV |
FAKATAQD.PKSA..QSGTGI.SESETE...SEI.IPPSTPAVP.APVQGEDYGKG.IFYLRDKVVVGIV | |
Retrocopy | FAKATAQDYPKSA--QSGTGISSESETEPKVSEITIPPSTPAVPKAPVQGEDYGKGIIFYLRDKVVVGIV |
Parental | LWNIFNRMPIARKIIKDGEQHEDLNEVAKLFNIHED |
LWNIFN.MPIARKIIKDGEQHEDLNEVAKLF.I.ED | |
Retrocopy | LWNIFNEMPIARKIIKDGEQHEDLNEVAKLFKIQED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018718 | 1 retrocopy | |
Homo sapiens | ENSG00000156709 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007635 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016006 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000060 | 1 retrocopy |
retro_tsyr_615 ,
|