RetrogeneDB ID: | retro_tsyr_634 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_15708:6021..6439(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CXorf56 | ||
Ensembl ID: | ENSTSYG00000008043 | ||
Aliases: | None | ||
Description: | chromosome X open reading frame 56 [Source:HGNC Symbol;Acc:26239] |
Percent Identity: | 84.51 % |
Parental protein coverage: | 63.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDM |
PE.IE.QYRKKCAKCGLPLFYQSQPKNAP.TFIVDGAV.KFGQGFGK.NI.TQKQEPP.KVM.TKRTKDM | |
Retrocopy | PEDIEWQYRKKCAKCGLPLFYQSQPKNAPMTFIVDGAVDKFGQGFGKMNICTQKQEPP-KVMTTKRTKDM |
Parental | GKFSSV-TVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQ |
GK.SS..TV.TID.E.EEIEAREVADSY.QN.KVIEKQ.E.KGMSKR.LQELAELEAK..KMK.TLIDNQ | |
Retrocopy | GKCSSI>TVFTID-EKEEIEAREVADSYEQNSKVIEKQQEHKGMSKR*LQELAELEAKVVKMKETLIDNQ |
Parental | FK |
FK | |
Retrocopy | FK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005111 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000012468 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015751 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012474 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020670 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022224 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003163 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006319 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011579 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008043 | 1 retrocopy |
retro_tsyr_634 ,
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