RetrogeneDB ID: retro_tsyr_791

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_20166:13211..13647(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPRYD7
• Ensembl ID: ENSTSYG00000007075
• Aliases: None
• Description: SPRY domain containing 7 [Source:HGNC Symbol;Acc:14297]

Sequence

>retro_tsyr_791
ACAGATGTTGTCACTGTAAAAAATGGAAATAGAATATGTGAAACAGGAAGTTGTTTAGCCAGTGTACCTTTACATCAAAA
CAAGAGCGACTTTGAATTCAAAATCCAGTTCACAGGAATTTGGGGTATTGGTGTTGCAATTCAGAAAGGTAACTTGAATC
AGAATTCTCTTGACCAGAGATGTGCACAGTCTGATGATGAGAAATGATGGAGTCCTGTACCACAACAATGAAGAGAAAAA
TAGGCTGACTGAAAATAGCATTCCACAGGAGGGAGAAGTGATGGGTATTACATATGACCATGTAGAATTAAATGTATATT
TGAATGGAAAAAATTAGTATTATCAAGCATCAGGTTTAAAAGGGACAGTGTTTCCAGCTGTTTGTGTTAATGACAGTGCA
ACTTTGGATTGCCAGTTCAGTGAATTTTACCATACT

Alignment

ORF - retro_tsyr_791 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.45 %
• Parental protein coverage: 92.95 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TDVVIVKNGRRICGTGGCLASAPLHQNKSYFEFKIQSTGIWGIGVATQKVNLNQ-IPLGRDVHSLVMRND
          TDVV.VKNG.RIC.TG.CLAS.PLHQNKS.FEFKIQ.TGIWGIGVA.QK.NLNQ.I.L.RDVHSL.MRND
Retrocopy TDVVTVKNGNRICETGSCLASVPLHQNKSDFEFKIQFTGIWGIGVAIQKGNLNQ>ILLTRDVHSLMMRND

Parental  GALYHNNEEKNRLPANSLPQEGDVVGITYDHVELNVYLNGKNMHCPASGIRGTVYPVVYVDDSAILDCQF
          G.LYHNNEEKNRL..NS.PQEG.V.GITYDHVELNVYLNGKN....ASG..GTV.P.V.V.DSA.LDCQF
Retrocopy GVLYHNNEEKNRLTENSIPQEGEVMGITYDHVELNVYLNGKN*YYQASGLKGTVFPAVCVNDSATLDCQF

Parental  SEFYHT
          SEFYHT
Retrocopy SEFYHT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_791 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000010799	2 retrocopies	retro_mdom_1497, retro_mdom_613,
Mus musculus	ENSMUSG00000021930	1 retrocopy	retro_mmus_3095,
Rattus norvegicus	ENSRNOG00000015095	1 retrocopy	retro_rnor_1652,
Tarsius syrichta	ENSTSYG00000007075	1 retrocopy	retro_tsyr_791 ,