RetrogeneDB ID:

retro_ttru_1018

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_100104:180987..181935(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SCML2
Ensembl ID:ENSTTRG00000000055
Aliases:None
Description:sex comb on midleg-like 2 (Drosophila) [Source:HGNC Symbol;Acc:10581]


Retrocopy-Parental alignment summary:






>retro_ttru_1018
ATGGGGCGAGCAGTGAATGAAGAGTCAGTGGATGCAAAGAAGGAGAATCAAGAGAAAGCTCCTCAGTCAGGCACATCTTC
TGTGCAAAATGATGATTTTCACTGGGAAAATTACTTGAAAGAGACTGGATCTTTAAGTGCTCCTTCAGAGTGTTTCAGAC
AGTCCAAGATTCCACCAGCTAATGACTTCAAAGTTGGTATGAAATTGGAAGCCCATGACCCTCGCAATATGATTTCAATA
TGTATCGCCACAGTCGTTGGAATTACTGGTGCCAGGCTACATTTAAGACTGGATGGTAGTGACAACAGAAATGATTTTTG
GCGGCTTGTTGATTCTGCGGACATACAGCCTGTTGGGACATGTGAAAAGGAGGCGGACTTACTTCAGCCTCTACTGGGGT
ACCAGATGAACATATCATCTTGGCCAGTGTTCCTCTTGCGAAAACTGAGTGGATCTGAAATGGCACCTGCAACATTCTTT
AAGAAGGAACCACCAAAGCCACCTCTAAATAATTTTAAAGTGGGAATGAAACTTGAAGCTATAGACAGAAAGAACCCTTA
TCTGATCTGCCCTGCAACTATTGGAAATGTTAAAGGAGATGAAGTTTATATCACATTCGATGGCTGGAGTGGAGCTTTTG
ATTATTGGTGCAAGTATGACTGTCTAGATATTTTCCCAGTTGGGTGGTGTCGCCTGACAGGAGATGTATTACAACCACCA
GGAACTCATGTTCCTGTTACAAAGAATACAGCAAAAACACAGACTTCTCCTTCCAAAGCAACCCAGCGTTCAATGCAGTC
TCTGCAGAAAACTGCTGTAATATTACCAACACAGCAGATCAGGAAATCAGGTCGTACTAAACCACCTGCACATACTTCAG
TCCCCAAGAAGGGGAGTTCTGTTAAAAATATCACACCAAGGAAAAAAGGCCCAAACTCAGGAAGAAAG

ORF - retro_ttru_1018 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.3 %
Parental protein coverage: 51.97 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGQTVNEESMDAKKENQEKAPQSGTSSVQDDDFNWENYLKETGSLSAPSECFRQSQIPPANDFKVGMKLE
MG..VNEES.DAKKENQEKAPQSGTSSVQ.DDF.WENYLKETGSLSAPSECFRQS.IPPANDFKVGMKLE
RetrocopyMGRAVNEESVDAKKENQEKAPQSGTSSVQNDDFHWENYLKETGSLSAPSECFRQSKIPPANDFKVGMKLE
ParentalAHDPRNMISICIATVVGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLRPPLGYQMNTSS
AHDPRNMISICIATVVGITGARL.LRLDGSDNRNDFWRLVDS.DIQPVGTCEKE.DLL.P.LGYQMN.SS
RetrocopyAHDPRNMISICIATVVGITGARLHLRLDGSDNRNDFWRLVDSADIQPVGTCEKEADLLQPLLGYQMNISS
ParentalWPMFLLRTLSGSEMAPATFFKKEPPKPPLNNFKVGMKLEAIDRKNPYLICPATIGNVKGDEVYITFDGWS
WP.FLLR.LSGSEMAPATFFKKEPPKPPLNNFKVGMKLEAIDRKNPYLICPATIGNVKGDEVYITFDGWS
RetrocopyWPVFLLRKLSGSEMAPATFFKKEPPKPPLNNFKVGMKLEAIDRKNPYLICPATIGNVKGDEVYITFDGWS
ParentalGAFDYWCKYDCRDIFPVGWCRLTGDVLQPPGTYVPVTKNIAKTQPSPSKATQRSMQSLQKTAVILPTQQI
GAFDYWCKYDC.DIFPVGWCRLTGDVLQPPGT.VPVTKN.AKTQ.SPSKATQRSMQSLQKTAVILPTQQI
RetrocopyGAFDYWCKYDCLDIFPVGWCRLTGDVLQPPGTHVPVTKNTAKTQTSPSKATQRSMQSLQKTAVILPTQQI
ParentalRKSGRTKPPAHTSVPKKGSSVKNITPRKKGPNSGRK
RKSGRTKPPAHTSVPKKGSSVKNITPRKKGPNSGRK
RetrocopyRKSGRTKPPAHTSVPKKGSSVKNITPRKKGPNSGRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1018 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1018 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000000055 1 retrocopy
retro_ttru_1018 ,



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