RetrogeneDB ID:

retro_ttru_1156

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_105818:108667..109222(-)
Located in intron of:ENSTTRG00000001893
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000006200
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1156
ATCTTCTCCCAGTTTGGCCTTCTGTATTCGGTCCGAGTCTTCCCAGATGCAGCAGTGGCCGGTCCTGGGTTCTATGCCAT
CATCAAGTTTTATTCAGCAAGGGATGCCCACAGAGCCCAAAAGGCATGCGACCAGAAGCAGCTTTTTCAGACATCTCCAG
TGAAGGTTCGTCTCGGCACCAGATATAAGGCGGTTCAACATAATACGCCTGCCCTAAACGGCTCCAGATACCAAGAATTG
GCAAATTACTACTTTGGTTTCAATAGGTGGTCAAAAAGGATCATCAGGCTTCAGGATCTTTCTAACCTTGAAGAAAGGGA
AAAGGAAGATATTGTGACACCACTTCACAAGCAAAGCCTGAAGTTCTTTTGTGCTTTAGAAGCGGTATTGCCCTCCCACG
AGTGCAGGAGTCCCGAAATTGGCATGGCTGAGGAACCTGTGGATAACTTGGAGGAAGGGTCGTTATCATTCCTTATGAAA
AGGAAGCTAACCCAGAAGGTTGCTATTCAGAAGGCTATGAGAGATGCATTCCAGAAACAGCTGATTGTGGTTTTA

ORF - retro_ttru_1156 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.73 %
Parental protein coverage: 83.71 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVFSQFGLLYSVRVFPNAAVAGPGFYGIIKFYSARDAHRAQKACDQKQLFQTSPVKVRLGTSHKAVQHNTP
.FSQFGLLYSVRVFP.AAVAGPGFY.IIKFYSARDAHRAQKACDQKQLFQTSPVKVRLGT..KAVQHNTP
RetrocopyIFSQFGLLYSVRVFPDAAVAGPGFYAIIKFYSARDAHRAQKACDQKQLFQTSPVKVRLGTRYKAVQHNTP
ParentalALNSSRCQELANYYFGFNGWSKRIIKLQDLSNLEEREKEDIVTPLQKQSLKFFCALEVVLPSHECRSPGV
ALN.SR.QELANYYFGFN.WSKRII.LQDLSNLEEREKEDIVTPL.KQSLKFFCALE.VLPSHECRSP..
RetrocopyALNGSRYQELANYYFGFNRWSKRIIRLQDLSNLEEREKEDIVTPLHKQSLKFFCALEAVLPSHECRSPEI
ParentalGMAEEPLDKLEEGSLSFLMKRKVTQKLAIQKAMTDAFQKLLIVVL
GMAEEP.D.LEEGSLSFLMKRK.TQK.AIQKAM.DAFQK.LIVVL
RetrocopyGMAEEPVDNLEEGSLSFLMKRKLTQKVAIQKAMRDAFQKQLIVVL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1156 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1156 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000000301 retrocopy
Oryctolagus cuniculus ENSOCUG000000227041 retrocopy
Tursiops truncatus ENSTTRG00000006200 1 retrocopy
retro_ttru_1156 ,



Copyright © RetrogeneDB 2014-2017