RetrogeneDB ID: | retro_ttru_1261 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | scaffold_108939:187704..188514(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RASSF6 | ||
| Ensembl ID: | ENSTTRG00000006588 | ||
| Aliases: | None | ||
| Description: | Ras association (RalGDS/AF-6) domain family member 6 [Source:HGNC Symbol;Acc:20796] |
Retrocopy-Parental alignment summary:
>retro_ttru_1261
ATGCTGGACATTTTCTGGGGAGTAAAGCAGCCTATACAACTGAAAACACAAGATGAGAAGCAAATCCCTTCTTTCACTGT
GCTGAAGTCACCAGATGTCTTTTCCAAAAGGGGAACGACACGCTGGGGAGAATTTCATGATCTTTACTGTATTAGTGATT
TGGACAGGACTCAGATTCCAGTGTCTGGACCAACAGATTCCCAGGAAGATTATTTATCTTATCACAGTAGCACTCTGAAG
CTTCATGCAGATGAAGAACCTGAATCCCCATTGCTCTATAGAACCAAGAGTGGAGCAACCCTGGTGAGAAAAAGGATGAA
GCCTCCGATGATGGACAGAAAGGACAGACAGAAGCATAGGGCCTCTATGAACGGACACTTTTATAACCATGAAACATCAA
TTTTCACTCCAGCCATTGGATCAGAAACTAAGGTCAGAATAAACAGTGATATGAGAACTGAAGAAGTAATAAAGCAAATT
CTCCAAAAATTTAAGATTGAAAATAGTGCCCGGGATTTTGCACTTTACATTATTTTTGCGACAGGAGAGCAGAGACGGCT
AAAGAAAACAGACATTCCGCTACTGCATAGACGTCTACAGGCACCATCCAAAAAGAATGCTCTCATTTTCCTCATGAATA
AAGACGCAGAAGAAATTAGCAGTGATGTGGCTCAGTATATTAACTTTCATTTTTCTCTCCTGGAATCCATCCTTCAAAGA
TTAGATGAAGAAGAGAAAAGAGAGATTCAAAGAACAATAACAAAATTCAGTACAGAAAAGGCTATCATACTGAAATGTCT
TCAAAGTAAA
ORF - retro_ttru_1261 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.74 % |
| Parental protein coverage: | 73.42 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MLDIFWGVKQPIQLKIQDEKQIPSFTVLKSPDVFSKR-MTRWGEFDDLYRISDLDRTQIPVSGATDTQED |
| MLDIFWGVKQPIQLK.QDEKQIPSFTVLKSPDVFSKR..TRWGEF.DLY.ISDLDRTQIPVSG.TD.QED | |
| Retrocopy | MLDIFWGVKQPIQLKTQDEKQIPSFTVLKSPDVFSKRGTTRWGEFHDLYCISDLDRTQIPVSGPTDSQED |
| Parental | YLSYHSSTLKLHADEEPESPLLYRTMSEAALVRKRMKPPTIDRKDRQKHRASINGHFYNH-TSIFTPAFG |
| YLSYHSSTLKLHADEEPESPLLYRT.S.A.LVRKRMKPP..DRKDRQKHRAS.NGHFYNH.TSIFTPA.G | |
| Retrocopy | YLSYHSSTLKLHADEEPESPLLYRTKSGATLVRKRMKPPMMDRKDRQKHRASMNGHFYNHETSIFTPAIG |
| Parental | SETKVRINSNMRTEEVIKQILQKFKIENSAQDFALYIIFATGEQRRLKKTDIPLLHRLLQGPSEKNARIF |
| SETKVRINS.MRTEEVIKQILQKFKIENSA.DFALYIIFATGEQRRLKKTDIPLLHR.LQ.PS.KNA.IF | |
| Retrocopy | SETKVRINSDMRTEEVIKQILQKFKIENSARDFALYIIFATGEQRRLKKTDIPLLHRRLQAPSKKNALIF |
| Parental | LMDKDAEEINSDVAQYINFHFSLLESILQRLNEEEKREIQRTITKFSTEKAIILKCLRSK |
| LM.KDAEEI.SDVAQYINFHFSLLESILQRL.EEEKREIQRTITKFSTEKAIILKCL.SK | |
| Retrocopy | LMNKDAEEISSDVAQYINFHFSLLESILQRLDEEEKREIQRTITKFSTEKAIILKCLQSK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1261 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1261 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000006588 | 1 retrocopy |
retro_ttru_1261 ,
|