RetrogeneDB - Retrocopy retro_ttru

						
>retro_ttru_1482
CTGCGGGAGGAGCAGCGCTATGGGCTGTCGTGCGGGAGGCTGGGACAGGACAACACCACCGTACTGCATGTGAAGCTCAC

CGAGACGGCGATCCGCGCGCTCGAGACCTACCAGAGCCACGAGAATTTAATTCCTTTTCGACCTTCAATTCAGTTCCAAG

GGCTCCAAGGGCTTGTCAAAATCCCTAAAAATGATCCCCCCAACGAAGTGCATACCTTTAACTTCTATTTGTCAAATGTG

GGTAAAGACAACCCTCAAGGCAGCTTTGACTGCATCCAGCAAACCTTCTCCAGCTCTGGAGCATCCCAGCTCAATTGCCT

GGGATTTATACAAGATAAAATTACAGTGTGTGCAACAAATGACTCGTATCAGATGACACGAGAAAGAATGACCCAGGCAG

AGGAGGAATCCCGCAACCGAAGCACAAAAGTTATCAAACCTGGTGGACCATATGTAGGGAAAAGAGTGCAAATTCGGAAA

GCACCTCAAGCTGTTTCAGATGCAGTGCCTGAGAGGAAAAGATCAACCCCCATGAACCCTGCAAATACCATTCGAAAGAC

ACATGGCAGCAGCAGTGTTTCCCAGCGGCCATATCGGGACAGGGTGATTCACTTACTGGCACTGAAGGCCTATAAGAAAC

CTGAGCTGCTAGCTCGACTGCAGAAAGACGGTGTCAATCAGAAAGACAAGAACTCCCTCGGAGCAATTCTGCAACAGGTA

GCCAATCTGAATCCTAAGGACCTCTCATACACCTTAAAGGATTATGTTTTTAAAGAGCTCCAAAGAGATTGGCCTGGATA

TAATGAAATAGACAGACGGTCATTAGAGTCAGTGCTCTCGAGAAAACTAAATCCATCTCAGAATGCTGCCAGCACCAGCC

GTTCAGAATCTCCTGTATGTTCTAGTAGAGACGCTGCATCTTCTCCTCAGAAACGGCTTTTAGATTCAGATTTCATTGAT

CCTTTAATGAATAAAAAAGCTCGAATATCTCACCTGACAAATAGAGTGCCGCCAACATTAAATGGTCATTTGAATCCCAC

CAGTGAAAAATCTGCTGCAGGCCCCCCGCTGCCCCCTGCAGCCGCTGCCATCCCCACGCCTCCACCGCTGCCTTCAACCC

ACCTGCCTGTCTCCAAT

ORF - retro_ttru_1482 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	51.8 %
Parental protein coverage:	63.65 %
Number of stop codons detected:	0
Number of frameshifts detected	0

Retrocopy - Parental Gene Alignment:

									ParentalLKEAHIYGLSSGGVSDGNKVSVFHVELTDSAERAFERYRSSQDSVSLRPSIRFQGSQGHISIPQPDCPTE
		L.E...YGLS.G.....N...V.HV.LT..A.RA.E.Y.S.......RPSI.FQG.QG...IP..D.P.E
RetrocopyLREEQRYGLSCGRLGQDN-TTVLHVKLTETAIRALETYQSHENLIPFRPSIQFQGLQGLVKIPKNDPPNE
ParentalPRTFSFYLSNIGRDSPQGSFDCIQQYVSSHGDVHLDCLGS-QDKITVCATDDSYQKARQSLAQAEEETRS
		..TF.FYLSN.G.D.PQGSFDCIQQ..SS.G...L.CLG..QDKITVCAT.DSYQ..R....QAEEE.R.
RetrocopyVHTFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDSYQMTRERMTQAEEESRN
ParentalRGAIVIKPGGRYLGKKVQFRKPAPGAVDAVPCRKRATPINLASAIKKTSAGSVSGVSQRPFRDRVLHLLA
		R...VIKPGG.Y.GK.VQ.RK......DAVP.RKR.TP.N.A..I.KT...S...VSQRP.RDRV.HLLA
RetrocopyRSTKVIKPGGPYVGKRVQIRKAPQAVSDAVPERKRSTPMNPANTIRKTHGSS--SVSQRPYRDRVIHLLA
ParentalLRPYRKAELLLRLQKDGLAQADKDALDGLLQQVANVNAKDGTCTLKDCVYKDVQKDWPGYSEGDQKLLKR
		L..Y.K.ELL.RLQKDG..Q.DK..L...LQQVAN.N.KD...TLKD.V.K..Q.DWPGY.E.D...L..
RetrocopyLKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKELQRDWPGYNEIDRRSLES
ParentalMLIRKLCQPQSSGGLPGDLAANSPAGEHGSSASPPQKRPQPPDFIDPLANKKPRISHFAQRGQPAVNGKL
		.L.RKL...Q............SP.......AS.PQKR....DFIDPL.NKK.RISH...R..P..NG.L
RetrocopyVLSRKLNPSQNAASTS---RSESPVCSSRDAASSPQKRLLDSDFIDPLMNKKARISHLTNRVPPTLNGHL
ParentalSVPHGREALLPTPGPLAGTDAHLPLRLEPPRAHDPLAD
		.......A..P...PL....A..P.....P..H.P...
RetrocopyNPTSEKSAAGP---PLPPAAAAIPTPPPLPSTHLPVSN

							

							Legend:
							
								*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

						

RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1482 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1482 was not experimentally validated.

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002123	1 retrocopy	retro_mluc_248,
Tursiops truncatus	ENSTTRG00000010436	1 retrocopy	retro_ttru_1482 ,

	RetrogeneDB ID:	retro_ttru_1482
Retrocopy location	Organism:	*Dolphin (Tursiops truncatus)*
	Coordinates:	scaffold_114330:89943..91080(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	ELL
	Ensembl ID:	ENSTTRG00000010436
	Aliases:	None
	Description:	elongation factor RNA polymerase II [Source:HGNC Symbol;Acc:23114]

Parental	LKEAHIYGLSSGGVSDGNKVSVFHVELTDSAERAFERYRSSQDSVSLRPSIRFQGSQGHISIPQPDCPTE
	L.E...YGLS.G.....N...V.HV.LT..A.RA.E.Y.S.......RPSI.FQG.QG...IP..D.P.E
Retrocopy	LREEQRYGLSCGRLGQDN-TTVLHVKLTETAIRALETYQSHENLIPFRPSIQFQGLQGLVKIPKNDPPNE

Parental	PRTFSFYLSNIGRDSPQGSFDCIQQYVSSHGDVHLDCLGS-QDKITVCATDDSYQKARQSLAQAEEETRS
	..TF.FYLSN.G.D.PQGSFDCIQQ..SS.G...L.CLG..QDKITVCAT.DSYQ..R....QAEEE.R.
Retrocopy	VHTFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDSYQMTRERMTQAEEESRN

Parental	RGAIVIKPGGRYLGKKVQFRKPAPGAVDAVPCRKRATPINLASAIKKTSAGSVSGVSQRPFRDRVLHLLA
	R...VIKPGG.Y.GK.VQ.RK......DAVP.RKR.TP.N.A..I.KT...S...VSQRP.RDRV.HLLA
Retrocopy	RSTKVIKPGGPYVGKRVQIRKAPQAVSDAVPERKRSTPMNPANTIRKTHGSS--SVSQRPYRDRVIHLLA

Parental	LRPYRKAELLLRLQKDGLAQADKDALDGLLQQVANVNAKDGTCTLKDCVYKDVQKDWPGYSEGDQKLLKR
	L..Y.K.ELL.RLQKDG..Q.DK..L...LQQVAN.N.KD...TLKD.V.K..Q.DWPGY.E.D...L..
Retrocopy	LKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDLSYTLKDYVFKELQRDWPGYNEIDRRSLES

Parental	MLIRKLCQPQSSGGLPGDLAANSPAGEHGSSASPPQKRPQPPDFIDPLANKKPRISHFAQRGQPAVNGKL
	.L.RKL...Q............SP.......AS.PQKR....DFIDPL.NKK.RISH...R..P..NG.L
Retrocopy	VLSRKLNPSQNAASTS---RSESPVCSSRDAASSPQKRLLDSDFIDPLMNKKARISHLTNRVPPTLNGHL

Parental	SVPHGREALLPTPGPLAGTDAHLPLRLEPPRAHDPLAD
	.......A..P...PL....A..P.....P..H.P...
Retrocopy	NPTSEKSAAGP---PLPPAAAAIPTPPPLPSTHLPVSN

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ttru_1482