RetrogeneDB ID: retro_ttru_1580

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_24097:786..1488(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABHD17C
• Ensembl ID: ENSTTRG00000005787
• Aliases: None
• Description: abhydrolase domain containing 17C [Source:HGNC Symbol;Acc:26925]

Sequence

>retro_ttru_1580
GCAGCAGCCTAGCCCGCGCAGCAGCGGCCCGAGGAGGGCACGGGGCCCGGCGCTTGCAGCCTGCACCTGAGCTAGCGCGC
CGACTGGCAGTACTCGCGGCGCAAGCTGGACGCCGTCGAGGTCTTCTCACGCACGGCCCGGGATAACCGGTTCGGCTGCA
TGTTCGTGCGCTGCGCGCCCTCCAGCGGCTACACGCAGCTCTTCTCCCACGGCAGTGCCGTGGACCTGGGCCAGACGTGT
AGCTCCTTGTGATACATCGGCCTCCGCTCGCGCATCAACTGCAACATCTTCTCCTACGACTACTCCGGCTACGGCGCGTC
AGCTCGGGCAAGCCCTCTGAAAAGAACCTCTACGTTGCTATCGACGCCACGTGGCAGGCGCTGCGCACCTGGTATGGCGT
AAGTGCTGAGAACATCATCCTGTATGGTCAGAGCTTTGGGACCGTCCCCACTGTACACCTGGCCTCCGGGTATGAGTGTG
CAGCCGTAATTCTCCGTTCGCCTCTGATGCCTGGATTGCGTGTGGCTTTTCCCAATACCAGGAAAACATAGTGCTTTGAT
GCTTTCCCCAGCATTGACAAGATATCTAAAGTCACCTCTCCCGTGTTGGTCATTCACGGTACAAAGGACGAGGTCATCGA
TTTCTCCCATGGCCTGCCATGTATGAACGCTGTTCCCGGGCCGTGAGCCTCTCTGGGTCAAA

Alignment

ORF - retro_ttru_1580 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.42 %
• Parental protein coverage: 69.64 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  AAFYPAPQHSEGAGSGPGACSLHLSERADWQYSQRELDAVEVFFSRTARDNRLGCMFVRCAPSSRYTLLF
          AA..PA.Q..E..G.GPGACSLHLS.RADWQYS.R.LDAVEVF.SRTARDNR.GCMFVRCAPSS.YT.LF
Retrocopy AAA*PAQQRPE-EGTGPGACSLHLS*RADWQYSRRKLDAVEVF-SRTARDNRFGCMFVRCAPSSGYTQLF

Parental  SHGNAVDLGQMCSF--YIGLGSRINCNIFSYDYSGYGVSS-GKPSEK-NLYADIDAAWQALRTRYGVSPE
          SHG.AVDLGQ.CS...YIGL.SRINCNIFSYDYSGYG.S....P....NLY..IDA.WQALRT.YGVS.E
Retrocopy SHGSAVDLGQTCSSL*YIGLRSRINCNIFSYDYSGYGASARASPLKR<NLYVAIDATWQALRTWYGVSAE

Parental  NIILYGQSIGTVPTVDLASRYECAAVILHSPLMSGLRVAFPDTRKTYCFDAFPSIDKISKVTSPVLVIHG
          NIILYGQS.GTVPTV.LAS.YECAAVIL.SPLM.GLRVAFP.TRKT.CFDAFPSIDKISKVTSPVLVIHG
Retrocopy NIILYGQSFGTVPTVHLASGYECAAVILRSPLMPGLRVAFPNTRKT*CFDAFPSIDKISKVTSPVLVIHG

Parental  TEDEVIDFSHGL-AMYERCPRAV-EPLWVE
          T.DEVIDFSHGL.AMYERC.RAV.EPLWV.
Retrocopy TKDEVIDFSHGL<AMYERCSRAV<EPLWVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1580 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1580 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Rattus norvegicus	ENSRNOG00000012683	2 retrocopies	retro_rnor_1713, retro_rnor_1714,
Tarsius syrichta	ENSTSYG00000009403	3 retrocopies	retro_tsyr_1518, retro_tsyr_1994, retro_tsyr_2110,
Tursiops truncatus	ENSTTRG00000005787	1 retrocopy	retro_ttru_1580 ,