RetrogeneDB ID: retro_ttru_1651

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_83298:59795..60113(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DPH5
• Ensembl ID: ENSTTRG00000010835
• Aliases: None
• Description: diphthamide biosynthesis 5 [Source:HGNC Symbol;Acc:24270]

Sequence

>retro_ttru_1651
ATGCTTTACATGATCGGTTTGGGGCTGGGAGATGCCAAGGACATCACAGTCAAGGGCCTTGAAGTTCTAAGACGCTACAG
CCGAGGGTATCTGGAAGCCTATACCTCAGTCCTGACTGTAGGGAAGGAAGTTCTGGAAGAGTTTTATGGAAGAAAATTGA
TTCTCGCTGATAGAGAAGAATTGGAACAGGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTT
GTAGTTGGTGATCCATTTGGCGGTGTGGCTGACAGGGTCTTGGTGCTCTGGCCGGGTGTCAGGCCTGTGCCTCTGAGG

Alignment

ORF - retro_ttru_1651 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.08 %
• Parental protein coverage: 50.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLYMIGLGLGDAKDITVKGLEVLRRCSRVYLEAYTSVLTVGKEVLEEFYGRKLILADREEVEQEANNILK
          MLYMIGLGLGDAKDITVKGLEVLRR.SR.YLEAYTSVLTVGKEVLEEFYGRKLILADREE.EQEA.NILK
Retrocopy MLYMIGLGLGDAKDITVKGLEVLRRYSRGYLEAYTSVLTVGKEVLEEFYGRKLILADREELEQEADNILK

Parental  DADISDVAFLVVGDPFGATTHSDLILRATKLGIPYR
          DADISDVAFLVVGDPFG......L.L.......P.R
Retrocopy DADISDVAFLVVGDPFGGVADRVLVLWPGVRPVPLR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1651 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1651 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019995	1 retrocopy	retro_cfam_504,
Dasypus novemcinctus	ENSDNOG00000006658	1 retrocopy	retro_dnov_633,
Tursiops truncatus	ENSTTRG00000010835	1 retrocopy	retro_ttru_1651 ,