RetrogeneDB ID:

retro_ttru_1684

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_85593:26332..27097(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PIM1
Ensembl ID:ENSTTRG00000001968
Aliases:None
Description:pim-1 oncogene [Source:HGNC Symbol;Acc:8986]


Retrocopy-Parental alignment summary:






>retro_ttru_1684
GACCACTTGCCAGTGGCCATCAAGCACGTGGAGAAGGACTGTATTTCAGGCTGGGGAGAGCTGCCTGACGGCACCCGAGT
GCCCATGGAAGTGGTTCTGCTGAAGAAGGTGAGCTCGGGCTTCCCCGGCGTCATCAGGCTCCTGGGCTGGTTCGAGAGAC
CCAGCAGTTTCGCCCTGATCCTGGACAGGCCCGAGCCAGCAGCGCAAGAACGCTTCGACTTAATCACGGAAATGGGGGCC
CTGCAGGCGGAGCTGGCCCACAGCTGCTTCTGGCAGGTGCTGCAGGCCGTGCGGCACTGCCGCAGCTGCGGGGCGCTTCA
CCGCGACGGCAAGGATGAGAACACCCTTATCGACCTCAGTCGCGGTGAGCTCAAACTCATCGACTTCAGGTCGGGGGCGC
TGCTCGAGGACACCGTCTACACGGACTTCGATGGGACCCGAGCATATAGTCCTCCAGAGTGGATCCACTACCATCGCTAC
CATGGCAAGTCAGCAGCCGTCTGGTCTCTGGGGATCCTGCTGTAGGATATGGTCTGTGGAGATATTCCCTTTGAGCACGA
CGAGGAGACCATCAGGGGCCAAGTTTTCTTCAGGCAGAGGGTCTCTTCAGCGTGTCAACATCTCATTAGATGGTGCTTGG
CCCTGAGACCATCAGATCGGCCATCCTTCAAAGAAATCCAGAACCATCCATGGATGCAAGATGTCCTCCTGCCCCAGGAA
ACTGCTGAGATCCATCTCCACAGCCTGTTGCCAAGGCCCAGCAGA

ORF - retro_ttru_1684 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.88 %
Parental protein coverage: 99.61 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDNCPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPV-QD
D..PVAIKHVEKD.IS.WGELP.GTRVPMEVVLLKKVSSGF.GVIRLL.WFERP.SF.LIL.RPEP..Q.
RetrocopyDHLPVAIKHVEKDCISGWGELPDGTRVPMEVVLLKKVSSGFPGVIRLLGWFERPSSFALILDRPEPAAQE
ParentalLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLSRGELKLIDFGSGALLKDTVY
.FD.ITE.GALQ.ELA.S.FWQVL.AVRHC..CG.LHRD.KDEN.LIDLSRGELKLIDF.SGALL.DTVY
RetrocopyRFDLITEMGALQAELAHSCFWQVLQAVRHCRSCGALHRDGKDENTLIDLSRGELKLIDFRSGALLEDTVY
ParentalTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
TDFDGTR.YSPPEWI.YHRYHG.SAAVWSLGILL.DMVCGDIPFEHDEE.IRGQVFFRQRVSS.CQHLIR
RetrocopyTDFDGTRAYSPPEWIHYHRYHGKSAAVWSLGILL*DMVCGDIPFEHDEETIRGQVFFRQRVSSACQHLIR
ParentalWCLALRPSDRPSFEEIQNHPWMQDVLLPQETAEIHLHSLLPGPSK
WCLALRPSDRPSF.EIQNHPWMQDVLLPQETAEIHLHSLLP.PS.
RetrocopyWCLALRPSDRPSFKEIQNHPWMQDVLLPQETAEIHLHSLLPRPSR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1684 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1684 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000001968 1 retrocopy
retro_ttru_1684 ,



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