RetrogeneDB ID: retro_ttru_1718

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_87928:68088..69014(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTR10
• Ensembl ID: ENSTTRG00000013521
• Aliases: None
• Description: actin-related protein 10 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17372]

Sequence

>retro_ttru_1718
GCTGGCATGCCTAAGCCTATCAAAGTTGTACAATATAATATCAATACAGAAGAATTATATTCCTACCTAAAGGAATTCAT
CCACATACTGTATTTCAGGCATCTATTGGTGAATCCCAGAGACCGCAGAGTTGTGGTTATTGAGTCGGTATTATGTCCTT
CCCACTTCAGAGAGACACTCACTCGTGTTCTTTTCAAGTATTTTGAGGTTCCATCTGTCTTGCTTGCTCCAAGTCATCTA
ATGGCTCTTCTTAAACTTGGGATAAACTCTGCCATGGTCCTGGATTGTGGATATAGAGAAAGCTTGGTGTTACCTATATA
TGAAGGAATCCCAGTACTAAATTGTTGGGGAGCACTCCCCCTAGGAGGAAAAGCTCTTCACAAGGAGTTGGAAACTCAAC
TATTGGAACAATGTACTGTTGACACAGGGGCTGCTAAAGAACAGAGCCTTCCCTCTGTGATGGGTTCAATTCAAGAAGGT
ATCTTGGAGGACATTAAAGTGCACACTTGCTTTGTTAGTGATCTGAAGCGTGGACTAAAAATCCAAGCAGCAAAATTTAA
TATTGATGGGAATACTGAGTGTCCCTCACCACCCCCAAATGTTCACTACCCGTTAGATGGAGAGAAGATTTTACATGTCC
TTGGATCAATCAGAGATTCGGTTGTGGAAATCCTTTTTGAGCAAGATAATGAAGAGAAATCAGTTGCCACTTTAATATTG
GATTCCCTTATGCAGTGCCCAGTAGACACTAGGAAGCAACTAGCAGAGAATTTGGTAGTCATAGGTGGCACGTCTGTGTT
GCCAGGATTCCTCCACAGACTACTTGCAGAAATAAGGTATTTGGTAGAAAAACCAAAATATAAAAAACACTTAGCACCAA
GACATTCTGAATGCATACTCCACCTGCAAAGACTAATTGTGTAGCC

Alignment

ORF - retro_ttru_1718 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.16 %
• Parental protein coverage: 73.98 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AGMPKPIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEV
          AGMPKPIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEV
Retrocopy AGMPKPIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEV

Parental  PSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTV
          PSVLLAPSHLMALL.LGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTV
Retrocopy PSVLLAPSHLMALLKLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTV

Parental  DTGAAKEQSLPSVMGSIPEGILEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERPSPPPNVDYPLDGEKI
          DTGAAKEQSLPSVMGSI.EGILEDIKV.TCFVSDLKRGLKIQAAKFNIDGNTE.PSPPPNV.YPLDGEKI
Retrocopy DTGAAKEQSLPSVMGSIQEGILEDIKVHTCFVSDLKRGLKIQAAKFNIDGNTECPSPPPNVHYPLDGEKI

Parental  LHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRY
          LHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCP.DTRKQLAENLVVIGGTS.LPGFLHRLLAEIRY
Retrocopy LHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPVDTRKQLAENLVVIGGTSVLPGFLHRLLAEIRY

Parental  LVEKPKYK-KILGTKTFRIHTP--KANCVA
          LVEKPKYK.K.L.TKTF..HTP..K.NCVA
Retrocopy LVEKPKYK<KTLSTKTF*MHTPPAKTNCVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1718 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1718 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000011261	1 retrocopy	retro_dnov_1440,
Myotis lucifugus	ENSMLUG00000007553	1 retrocopy	retro_mluc_683,
Otolemur garnettii	ENSOGAG00000000380	1 retrocopy	retro_ogar_149,
Tursiops truncatus	ENSTTRG00000013521	1 retrocopy	retro_ttru_1718 ,