RetrogeneDB ID: | retro_ttru_1769 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | scaffold_91016:910..1942(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SLC25A25 | ||
| Ensembl ID: | ENSTTRG00000016474 | ||
| Aliases: | None | ||
| Description: | solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663] |
Retrocopy-Parental alignment summary:
>retro_ttru_1769
ATGGACAAGAATGGTACGACGACCATCGACTGGAACGAGTGGCGAGACTATCGCCTCCTGCATCCCGTGGAAAACATCCC
TGAGATCACCCTGTACTGGAAGCATTCCACGATCTTTGATATGGGTGAGAATCTGACGGTCCCCGATGAGTTCACGGCGG
AGGAGAGGCAGACAGGGATGTGGTGGCGACACCTGGTGGCTGGCGGTGGGGCGGGGGCTGTATCGAGAACCTGCACGGCC
CCCCTGGACAGACTCAAGGTGCTCATGCAGGTCCACACCTCCCGCAGGAACAACATGTGCATCGTGGGTGGCTTCACCCA
GATGATTCGAGCAGGAGGGGCCAAATCACTCTGGCGGGGCAACGGCATCAACGTCCTCAAAACTGCCCCCGAGTCGGCCA
TCAAGTTCATGGCCTATGACGCAGATCTAGTGTCTCATTGGGAGTGACCAAGAGACTCTGAAGATTCGCGAGAGGCTTTT
GGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGCAGCAGCTACCCGATGAGGTCTTGAAGACCCGCATGGCCCTGTGCAA
CACAGGCCAGTACTCGGGCATGCTGGACTGTGCCAGGAAGATCCTAGCCAGAGAGGGCATGGCCGCCTTCTACAAAGGCT
ATGTTCCCAACATGCTGGGGATCATCCCCTACGCTGGGATAGACCTGGCCGTCTACGACATGCTCAAGAATGCCTGGCTG
CAGTGCTATGCAGTGAACAGCGCACACCCCAGAGTGTTTGTGCTCCTGGCCTGTGGCACCGTGTCCAGCGCCTGTGGCCA
GCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCCCAAGCCTCCATTGAGGGCTCTCCGGAGGTGACCA
TGATCAGCCTCTTCAAACAGATTCTGTGGACCGAGGGGGCCTTTGACCTGTACTGGGGGCTGGCCCCCAACTTCAGGAAG
GTGATTCCGGCCGTGAGCATCAGCTACATGGTGTACGAGAACCTGAAGATCACCCGAGGCGTGCAGTCGCAG
ORF - retro_ttru_1769 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.55 % |
| Parental protein coverage: | 67.06 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MDKNGTMTIDWNEWRDYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGG |
| MDKNGT.TIDWNEWRDY.LLHPVENIPEI.LYWKHSTIFD.GENLTVPDEFT.EERQTGMWWRHLVAGGG | |
| Retrocopy | MDKNGTTTIDWNEWRDYRLLHPVENIPEITLYWKHSTIFDMGENLTVPDEFTAEERQTGMWWRHLVAGGG |
| Parental | AGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYE |
| AGAVSRTCTAPLDRLKVLMQVH.SR.NNMCIVGGFTQMIR.GGAKSLWRGNGINVLK.APESAIKFMAY. | |
| Retrocopy | AGAVSRTCTAPLDRLKVLMQVHTSRRNNMCIVGGFTQMIRAGGAKSLWRGNGINVLKTAPESAIKFMAYD |
| Parental | -QIKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPM-EVLKTRMALRKTGQYSGMLDCARKILAREGMA |
| .QI..L.GSDQETL.I.ERL.AGSLAGAIAQSS.YPM.EVLKTRMAL..TGQYSGMLDCARKILAREGMA | |
| Retrocopy | >QI*CLIGSDQETLKIRERLLAGSLAGAIAQSSSYPM<EVLKTRMALCNTGQYSGMLDCARKILAREGMA |
| Parental | AFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRT |
| AFYKGYVPNMLGIIPYAGIDLAVY..LKNAWLQ.YAVNSA.P.VFVLL..............YPLALVRT | |
| Retrocopy | AFYKGYVPNMLGIIPYAGIDLAVYDMLKNAWLQCYAVNSAHPRVFVLLXXXXXXXXXXXXXXYPLALVRT |
| Parental | RMQAQASIEGAPEVTMSSLFRQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR |
| RMQAQASIEG.PEVTM.SLF.QIL.TEGAF.LY.GLAPNF.KVIPAVSISY.VYENLKIT.GVQS. | |
| Retrocopy | RMQAQASIEGSPEVTMISLFKQILWTEGAFDLYWGLAPNFRKVIPAVSISYMVYENLKITRGVQSQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1769 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1769 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000016474 | 1 retrocopy |
retro_ttru_1769 ,
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