RetrogeneDB ID: retro_ttru_1769

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_91016:910..1942(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A25
• Ensembl ID: ENSTTRG00000016474
• Aliases: None
• Description: solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]

Sequence

>retro_ttru_1769
ATGGACAAGAATGGTACGACGACCATCGACTGGAACGAGTGGCGAGACTATCGCCTCCTGCATCCCGTGGAAAACATCCC
TGAGATCACCCTGTACTGGAAGCATTCCACGATCTTTGATATGGGTGAGAATCTGACGGTCCCCGATGAGTTCACGGCGG
AGGAGAGGCAGACAGGGATGTGGTGGCGACACCTGGTGGCTGGCGGTGGGGCGGGGGCTGTATCGAGAACCTGCACGGCC
CCCCTGGACAGACTCAAGGTGCTCATGCAGGTCCACACCTCCCGCAGGAACAACATGTGCATCGTGGGTGGCTTCACCCA
GATGATTCGAGCAGGAGGGGCCAAATCACTCTGGCGGGGCAACGGCATCAACGTCCTCAAAACTGCCCCCGAGTCGGCCA
TCAAGTTCATGGCCTATGACGCAGATCTAGTGTCTCATTGGGAGTGACCAAGAGACTCTGAAGATTCGCGAGAGGCTTTT
GGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGCAGCAGCTACCCGATGAGGTCTTGAAGACCCGCATGGCCCTGTGCAA
CACAGGCCAGTACTCGGGCATGCTGGACTGTGCCAGGAAGATCCTAGCCAGAGAGGGCATGGCCGCCTTCTACAAAGGCT
ATGTTCCCAACATGCTGGGGATCATCCCCTACGCTGGGATAGACCTGGCCGTCTACGACATGCTCAAGAATGCCTGGCTG
CAGTGCTATGCAGTGAACAGCGCACACCCCAGAGTGTTTGTGCTCCTGGCCTGTGGCACCGTGTCCAGCGCCTGTGGCCA
GCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCCCAAGCCTCCATTGAGGGCTCTCCGGAGGTGACCA
TGATCAGCCTCTTCAAACAGATTCTGTGGACCGAGGGGGCCTTTGACCTGTACTGGGGGCTGGCCCCCAACTTCAGGAAG
GTGATTCCGGCCGTGAGCATCAGCTACATGGTGTACGAGAACCTGAAGATCACCCGAGGCGTGCAGTCGCAG

Alignment

ORF - retro_ttru_1769 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.55 %
• Parental protein coverage: 67.06 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MDKNGTMTIDWNEWRDYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGG
          MDKNGT.TIDWNEWRDY.LLHPVENIPEI.LYWKHSTIFD.GENLTVPDEFT.EERQTGMWWRHLVAGGG
Retrocopy MDKNGTTTIDWNEWRDYRLLHPVENIPEITLYWKHSTIFDMGENLTVPDEFTAEERQTGMWWRHLVAGGG

Parental  AGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYE
          AGAVSRTCTAPLDRLKVLMQVH.SR.NNMCIVGGFTQMIR.GGAKSLWRGNGINVLK.APESAIKFMAY.
Retrocopy AGAVSRTCTAPLDRLKVLMQVHTSRRNNMCIVGGFTQMIRAGGAKSLWRGNGINVLKTAPESAIKFMAYD

Parental  -QIKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPM-EVLKTRMALRKTGQYSGMLDCARKILAREGMA
          .QI..L.GSDQETL.I.ERL.AGSLAGAIAQSS.YPM.EVLKTRMAL..TGQYSGMLDCARKILAREGMA
Retrocopy >QI*CLIGSDQETLKIRERLLAGSLAGAIAQSSSYPM<EVLKTRMALCNTGQYSGMLDCARKILAREGMA

Parental  AFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRT
          AFYKGYVPNMLGIIPYAGIDLAVY..LKNAWLQ.YAVNSA.P.VFVLL..............YPLALVRT
Retrocopy AFYKGYVPNMLGIIPYAGIDLAVYDMLKNAWLQCYAVNSAHPRVFVLLXXXXXXXXXXXXXXYPLALVRT

Parental  RMQAQASIEGAPEVTMSSLFRQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR
          RMQAQASIEG.PEVTM.SLF.QIL.TEGAF.LY.GLAPNF.KVIPAVSISY.VYENLKIT.GVQS.
Retrocopy RMQAQASIEGSPEVTMISLFKQILWTEGAFDLYWGLAPNFRKVIPAVSISYMVYENLKITRGVQSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1769 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1769 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000016474	1 retrocopy	retro_ttru_1769 ,