RetrogeneDB ID: retro_ttru_1869

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_96360:19020..19343(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SH3BGR
• Ensembl ID: ENSTTRG00000015375
• Aliases: None
• Description: SH3 domain binding glutamic acid-rich protein [Source:HGNC Symbol;Acc:10822]

Sequence

>retro_ttru_1869
AGGATAGTGATCCGTATGTACATCGCACCTTCCTCTGGCTCCATGGTGATCAAGAAGAAACAGCAAGATGCGCTTGATTT
CTTAGAAGCTAACAAAATAGGATTTGAAGAAAAAGATATTGCAGCCAGTGAAGACAACTGGAAGTGGATGAGAGAAAATG
TTCCTGAAAAGTCGACCAGCCAAAGGGTACCCCCTGCCACCTGAGATTTTCAATGAAAGTCAGTACCATGGCGACTAAGA
TGTCTTCTTTGAAGCCAGAGAAAATAATGCAGTGTTTGCCTTTTTTAGGTTTAACAGCCCCACCTGGTTCAAAGCAAGCA
GAA

Alignment

ORF - retro_ttru_1869 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60. %
• Parental protein coverage: 53.5 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KMVIKVFVT-SSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRKWMRENVPGEK-KPQNGIPLPPQ
          ..VI......SSGS..I.KKQQ....FLEANKI.F.E.DIA..EDN.KWMRENVP.EK..P..G.PLPP.
Retrocopy RIVIRMYIAPSSGSMVIKKKQQDALDFLEANKIGFEEKDIAASEDNWKWMRENVP-EK>RPAKGYPLPPE

Parental  IFNEEQYCGDFDSFFSAKEENIIYS-FLGLAPPPGSKGTE
          IFNE.QY.GD.D.FF.A.E.N.....FLGL..PPGSK..E
Retrocopy IFNESQYHGD*DVFFEARENNAVFA>FLGLTAPPGSKQAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1869 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1869 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000015375	1 retrocopy	retro_ttru_1869 ,
Tursiops truncatus	ENSTTRG00000017306	1 retrocopy	retro_ttru_141,