RetrogeneDB ID:

retro_ttru_1893

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_97607:4927..5257(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V0B
Ensembl ID:ENSTTRG00000001290
Aliases:None
Description:ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b [Source:HGNC Symbol;Acc:861]


Retrocopy-Parental alignment summary:






>retro_ttru_1893
ATCTGCTACACCAGTTTTGACTTGGGCTCCCGCTTTGATGTGGCATGGTTCCTGACGGAGACTTCCCCCGTCATGTGGTC
AAACCTGGGCATTGGCCTAGCTATCTCCCTGTCTGTGGTTGGGACGGCATGGGGCATCTGCATCACTGGCTCTTGCATCA
CTGGGGAAGGGGTGAAGGCCCCAAGGATTAAGACCAAGAACCTGATCAGCATCATCTTCTGTGAGGCTGTGGCCGTCTAC
GGCATCATCATGGCGATTGTCATTAGCAACAGGGCTGAGCCTTGCAGTGCTCCTGACCCCAAAGCCATTGGCCATCAAAA
CTACCATGCA

ORF - retro_ttru_1893 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.27 %
Parental protein coverage: 60.44 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVS
ICYT.FDLG.RFDVAWFLTETSP.MWSNLGIGLAISLSVVG.AWGI.ITGS.I.G.GVKAPRIKTKNL.S
RetrocopyICYTSFDLGSRFDVAWFLTETSPVMWSNLGIGLAISLSVVGTAWGICITGSCITGEGVKAPRIKTKNLIS
ParentalIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHA
IIFCEAVA.YGIIMAIVISN.AEP.SA.DPKAIGH.NYHA
RetrocopyIIFCEAVAVYGIIMAIVISNRAEPCSAPDPKAIGHQNYHA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1893 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1893 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000001290 1 retrocopy
retro_ttru_1893 ,



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