RetrogeneDB ID:

retro_ttru_1939

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_99585:9681..10499(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KIAA0895
Ensembl ID:ENSTTRG00000002703
Aliases:None
Description:KIAA0895 [Source:HGNC Symbol;Acc:22206]


Retrocopy-Parental alignment summary:






>retro_ttru_1939
CCTCGCCCCCCAGCGCCCGCCGCCCGCGGCCTCATTGGGACGATGCTGGAGTCCACTCGCGGAACGGAAAAGCTTCACTG
GCCTGAGCAAGAACTTGCTAAGAAGTCTATTCTAAATGCAGAAGAGTCCTTGATCATTGACAGCAAAAGAAGCATGCCAC
ATTTACCTCCTGGAATACTAAAGGACATTTTCACAACTGGAACCAGTAGTTACAATGTCCTACTACAGAGCAAAGAGGAG
AAAGAGCATCATTCACTAAAACAGTCTTCCTCCACTTACTCCAAAAGATGTAGAAAACCCAGCAATCTCGTAGCTCTTCA
TGTAGTAAAGATCTTCACAAGATAAAAGCCCCAGTGCCTGTGATGAGCAGTGGTACTTGGTACTGCCTACAGAGGCAGCC
TGCTGTTTTTGTCACTAGTTCAGTGTCAAGTCCTGTAAAGTTTACACATGGTATCTCTGTCACAGGAAACAGCGTAGTAC
TGCCACCTACACCCCAAAATGAAAGAAAGGTCAAGCGACGCCATTTCCCTACTTTTCCAAAGCCAAAGCCGCAGTCTCAG
CTGTCTAGAAGTTTTGAAAAAGGAGATGAATTTTCTGGAAGGAAATTTTGTATACTGACTGCTATAAAGCCCACCAACTT
GGAGAAAGAAAAAGTGACTCTTAAGTCTGACTTCACCTACAATCCTCAGTTTGAATATGCTAATCCTTCTCTGCTAAGTG
TCTTAACCAAGCACAACAAAGCAACTGACCAGTTTCTTAAGCAGGTAAAATGCTACTTCAGTAGTGGTATTTCATTTTAT
GTAATGAAAACAATCATT

ORF - retro_ttru_1939 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.29 %
Parental protein coverage: 50.28 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPAPAEPAARGLSGTMLESIRVTEKLHWPEQELAKKSILNAEESLIIGSKGSISHLSPGILKDIFTTGTSS
P.P..PAARGL.GTMLES.R.TEKLHWPEQELAKKSILNAEESLII.SK.S..HL.PGILKDIFTTGTSS
RetrocopyPRPPAPAARGLIGTMLESTRGTEKLHWPEQELAKKSILNAEESLIIDSKRSMPHLPPGILKDIFTTGTSS
ParentalYNVLLQSKEEKKHHSQKQSSSTYSKRCR-KPSKS-SSSRSKDLRKMKAPVPVMSSDTWYCLERQPAVFVT
YNVLLQSKEEK.HHS.KQSSSTYSKRCR.K...S.SSS.SKDL.K.KAPVPVMSS.TWYCL.RQPAVFVT
RetrocopyYNVLLQSKEEKEHHSLKQSSSTYSKRCR<KTQQSRSSSCSKDLHKIKAPVPVMSSGTWYCLQRQPAVFVT
ParentalSSVSSPVKFTHDISVTGNSTVLPPKPKNERKVKRRHFSTLPKPKLQPQLSRSFEKGDDFSGKKFCILSAI
SSVSSPVKFTH.ISVTGNS.VLPP.P.NERKVKRRHF.T.PKPK.Q.QLSRSFEKGD.FSG.KFCIL.AI
RetrocopySSVSSPVKFTHGISVTGNSVVLPPTPQNERKVKRRHFPTFPKPKPQSQLSRSFEKGDEFSGRKFCILTAI
ParentalKPTNLEKEKLSLKSDFTYNPQFEYANPSLLSVLTKHNKATDRFLKQIVVHLTEDLLSRASMTVV
KPTNLEKEK..LKSDFTYNPQFEYANPSLLSVLTKHNKATD.FLKQ...............T..
RetrocopyKPTNLEKEKVTLKSDFTYNPQFEYANPSLLSVLTKHNKATDQFLKQVKCYFSSGISFYVMKTII

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1939 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1939 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000002703 1 retrocopy
retro_ttru_1939 ,



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