RetrogeneDB ID: | retro_ttru_268 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1736:50046..50470(+) | ||
Located in intron of: | ENSTTRG00000005348 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSTTRG00000011524 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 62.68 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FACAKLACTPALIRAGSRVAYRPISASVLSRPEARTGESSTVFNGAQNGVSQLI-QREFQTSAVSRDIDT |
.A.AK...T..LI...S.......S...L...E..T.ES.............LI....FQTSA.SRDIDT | |
Retrocopy | YAYAKFVSTSSLIKRTSALLS*SLSTVMLKQ*ETLTDESHSSLAAPSPLTTSLIPSHTFQTSAISRDIDT |
Parental | AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNRSLKQQLFSYAILGF-ALSEAMGLFCLMVAFLILF |
..KF.GAGAATVGVAGSGAGIGTVFGSLIIGYARN.SLKQQLF..AILGF.ALS.AMGLFCLM.AFLILF | |
Retrocopy | ETKFTGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFFCAILGF>ALSVAMGLFCLMLAFLILF |
Parental | AM |
AM | |
Retrocopy | AM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002944 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013366 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012592 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000008207 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010440 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010768 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012822 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003954 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009520 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012159 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008526 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011524 | 3 retrocopies |
retro_ttru_268 , retro_ttru_510, retro_ttru_588,
|