RetrogeneDB ID:

retro_ttru_295

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1798:54940..55385(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YEATS4
Ensembl ID:ENSTTRG00000013951
Aliases:None
Description:YEATS domain containing 4 [Source:HGNC Symbol;Acc:24859]


Retrocopy-Parental alignment summary:






>retro_ttru_295
GAAAGAAAAGAGGATGGGCACACCCATCCGTGGACAGTATATGTAAAACCATATCGAAATGAGGATATGTCAGCATATGT
GAAGAAAATCCAATTTAAATTACATGAAAGCTATGGCAGTCCTTTAAGAGTTGTTACTAAGCCTCCCTATGGAATTACTG
AAGCAGGCTGGGGTGAATTCGAAATAGTCATCAAAGTATTTTTCATTGATCCTAATGAAAGACCTGTAACCCTATATCAT
TTATTAAAGCTATTTCAATCAGACACCAATGCAATGCTGGGAAAAAAGACAGTGGTTTCAGAGCTCTATGATGAAATGAT
ATTTCAAGACGCAATCAGCGATGATACAACAATTATTAACATCTCGTCAGCTTACCTTAGGATCCTATAAGCATGAAACA
GAATTTGCAGAACTTGAAGTGAAGACCAGAGAAAAATTAGAAGCT

ORF - retro_ttru_295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90. %
Parental protein coverage: 65.64 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFID
.R.EDGHTH.WTVYVKPYRNEDMSAYVKKIQFKLHESYG.PLRVVTKPPY.ITE.GWGEFEI.IK.FFID
RetrocopyERKEDGHTHPWTVYVKPYRNEDMSAYVKKIQFKLHESYGSPLRVVTKPPYGITEAGWGEFEIVIKVFFID
ParentalPNERPVTLYHLLKLFQSDTNAMLGKKTVVSEFYDEMIFQD-PTAMMQQLLTTSRQLTLGAYKHETEFAEL
PNERPVTLYHLLKLFQSDTNAMLGKKTVVSE.YDEMIFQD...AM.QQLL.TSRQLTLG.YKHETEFAEL
RetrocopyPNERPVTLYHLLKLFQSDTNAMLGKKTVVSELYDEMIFQD>QSAMIQQLL-TSRQLTLGSYKHETEFAEL
ParentalEVKTREKLEA
EVKTREKLEA
RetrocopyEVKTREKLEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_295 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_295 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000107931 retrocopy
Microcebus murinus ENSMICG000000024671 retrocopy
Monodelphis domestica ENSMODG000000203771 retrocopy
Nomascus leucogenys ENSNLEG000000038371 retrocopy
Oryctolagus cuniculus ENSOCUG000000115521 retrocopy
Tursiops truncatus ENSTTRG00000013951 2 retrocopies
retro_ttru_226, retro_ttru_295 ,



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