RetrogeneDB ID:

retro_ttru_306

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1818:615435..616281(+)
Located in intron of:ENSTTRG00000009981
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CPNE4
Ensembl ID:ENSTTRG00000010418
Aliases:None
Description:copine IV [Source:HGNC Symbol;Acc:2317]


Retrocopy-Parental alignment summary:






>retro_ttru_306
ATTGGAGAATTCACCTCAACATTCAAGTAGATGAGAAGAGTGATGGAAGGAAAACAGGTGCAGTAGGAGTGCATCAACCC
CAAGTACAAAGCCAAGAAGAAGAATTATAAGAACTCAGGCATTGTGATTTTGAATCAGTGCAAGACCCACAAGATGCATT
CTTTCTTGGACTACATCATGGGTGGCTGCCTAATCCAGTTTACAGTAGCTATAGATTTCACAGCCTCGAATGGGTACCCC
AGGAACAGCTGTTCCCTGCCCTACATCCACCCCTGCCAGCCCAATGAGTACCTGAAGGCCTTGGAGGCTGTGGGAGAGAT
TTGCCAAGACTATGATAGCAACAAAATGTTCCCAGCCTTTGGGTTTGGTGCCAGGATACTGCCAGAGTACAGGGTATCTC
ATGACTTCGCAATCAACTTTAATGAAGACAACCCAGAATGGGCAGGGATTCAAGGAGTTGTGGAAGCCTACCAGAGCTGC
CTTCCCAAACTCTAGCTCTAGGGCCCCACCAACAGTGCTCCCATCATGCAGAAGGTCGCCAAGTCAGCATCAGAGGAGAC
CAGCACCAAGGAGGCATCACAATACTTCATCCTGCTGATCCCGACCGACGGGGTCATCACAGACATGGCCGACACGCGGG
AGGACATTGTCCACGCCTCCCACCTCTCCATGTCGGTCATCATCGTGGGAGTGGGCAATGCAGACTTCAGCGACATGCAG
ATGCTGGACAGAGACGACGGGATTCTGAGGTCACCCAAGGGAGAGCCCGTCCTTCGTGACATCGTCCAGTTCGTGCCCTT
CAGGAACTTCAAACACACATCTCCAGCTGCCCTGGCAGAGCGTGTT

ORF - retro_ttru_306 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.65 %
Parental protein coverage: 50.63 %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalIGEFTSTFKEMRGVMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVA
IGEFTSTFK.MR.VMEGKQVQ.ECINPKYKAKKKNYKNSGIVILNQCK.HKMHSFLDYIMGGC.IQFTVA
RetrocopyIGEFTSTFK*MRRVMEGKQVQ*ECINPKYKAKKKNYKNSGIVILNQCKTHKMHSFLDYIMGGCLIQFTVA
ParentalIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINF
IDFTASNG.PRNSCSL.YIHP.QPNEYLKAL.AVGEICQDYDS.KMFPAFGFGARI.PEY.VSHDFAINF
RetrocopyIDFTASNGYPRNSCSLPYIHPCQPNEYLKALEAVGEICQDYDSNKMFPAFGFGARILPEYRVSHDFAINF
ParentalNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITGMA
NEDNPE.AGIQGVVEAYQSCLPKL.L.GPTN.API.QKVAKSASEET.TKEASQYFILLI.TDGVIT.MA
RetrocopyNEDNPEWAGIQGVVEAYQSCLPKL*L*GPTNSAPIMQKVAKSASEETSTKEASQYFILLIPTDGVITDMA
ParentalGRRGALVHASHLPMSVIIVGVGNADFSDMQGLDGDDGILRSPKGEPVLGDIVQFVPFRNFKHASPAALAK
..R...VHASHL.MSVIIVGVGNADFSDMQ.LD.DDGILRSPKGEPVL.DIVQFVPFRNFKH.SPAALA.
RetrocopyDTREDIVHASHLSMSVIIVGVGNADFSDMQMLDRDDGILRSPKGEPVLRDIVQFVPFRNFKHTSPAALAE
ParentalSV
.V
RetrocopyRV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_306 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_306 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000010418 1 retrocopy
retro_ttru_306 ,



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