RetrogeneDB ID: retro_ttru_313

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1836:82617..83628(-)
• Located in intron of: ENSTTRG00000002009

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABCG2
• Ensembl ID: ENSTTRG00000015227
• Aliases: None
• Description: ATP-binding cassette, sub-family G (WHITE), member 2 [Source:HGNC Symbol;Acc:74]

Sequence

>retro_ttru_313
AGGGAGACTGAAGAGCCTTCCAAGAAAGATACTCCGCTCATAGGAAAATTAACTGAGTTTTATGCCAACTCCTCCTTCTT
CAAGGAGACAAAAGTTGAGTTAGATCAACTCTCAGGGGGTCAGAAGAAGAATATTTCAGTCTACAAGGAGATCACCTATG
CCACCTCCTTCTGTCATCAGCTCAGATGGATTTCCAGGCGTTCATTCAAAAACTTACTGGGTGATCTCCAGGTTTCTATA
GTTCAGATAATTGTAACAGTCATCCTGGGACTGGTTATAGGTGCCATTTTCTACCATCTAAAAAATGATCCTACAGGAAT
GCAGAACAGAGCCGGGGTGCGCTTCTTCCTGACCACCAACCAGTGTTTCAGCAGTGTGTCGGCCGTGGAGCTCCTGGTGG
TCGAGAAGAAGCTCTTCATACATGAATATATCAGTGGATACTACAGAGTGTCATCTTACTTCTTTGGAAAACTGTTATCT
GATTTACTCCCCATGTTACCAAGTATTATATTTGCTAGTATAACATACTCCCTGTTAGGATTGAAACCACAGGTGGAGGC
CTTCTTCATCATGATGTTTACCGTGATGATGGTGGCTTATTCAGCCTGTTCAATGGCGCTGGCCATAGCAGCAAGTCAGA
GCGTGGTATCCATAGCAACGCTTCTCATGACCATCTCTTTTGTGTTTATGATGATATTTTCAGGGCTGTTGGTAAATCTC
AGAACCGTTGTGCCTTGGCTCTCGTGGCTTCAGTACTTTAGCATTCCTCGATATGGCTTTGCGGCTTTGCAGCATAATGA
ATTTCTGGGACAAAACTTCTGCCCAGGACTCAGTGTAACAACAAACAGTACCTATAGCTATGCAATATGTACTGGCAAAG
AATTTCTGGAAAACGAGGGCGTCACTTTCTCACCTTGGGGCCTGTGGAGGAATCACGTAGCCTTGGCACGCATGATTGTT
ACCTTCCTTACAGTTGCCTACCTGAAATTATTATTCCTTAAACATTTTTCC

Alignment

ORF - retro_ttru_313 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.82 %
• Parental protein coverage: 51.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KETEEPSKTDTPLIGKLTEFYANSSFFKETKAELEQLSGGQRKKKISVYKEITYATSFCHQLRWISRRSF
          .ETEEPSK.DTPLIGKLTEFYANSSFFKETK.EL.QLSGGQ.KK.ISVYKEITYATSFCHQLRWISRRSF
Retrocopy RETEEPSKKDTPLIGKLTEFYANSSFFKETKVELDQLSGGQ-KKNISVYKEITYATSFCHQLRWISRRSF

Parental  KNLLGNPQASIAQIIVTIVLGLVIGAIFYDLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLF
          KNLLG..Q.SI.QIIVT..LGLVIGAIFY.LKNDP.G.QNRAGV.FFLTTNQCFSSVSAVELLVVEKKLF
Retrocopy KNLLGDLQVSIVQIIVTVILGLVIGAIFYHLKNDPTGMQNRAGVRFFLTTNQCFSSVSAVELLVVEKKLF

Parental  IHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTSITYFLLGLKPQVEAFFVMMFTLMMVAYSASSMAL
          IHEYISGYYRVSSYFFGKLLSDLLPM..LPSIIF.SITY.LLGLKPQVEAFF.MMFT.MMVAYSA.SMAL
Retrocopy IHEYISGYYRVSSYFFGKLLSDLLPM--LPSIIFASITYSLLGLKPQVEAFFIMMFTVMMVAYSACSMAL

Parental  AIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLRTVVPWLSWLQYFSIPRYGFAALQHNEFLGQNFCPGL
          AIAA.QSVVSIATLLMTISFVFMMIFSGLLVNLRTVVPWLSWLQYFSIPRYGFAALQHNEFLGQNFCPGL
Retrocopy AIAASQSVVSIATLLMTISFVFMMIFSGLLVNLRTVVPWLSWLQYFSIPRYGFAALQHNEFLGQNFCPGL

Parental  NVTTNTTCSYAICTGEEFLESQGIDLSPWGLWRNHVALACMIVIFL-IAYLKLLFLKKFS
          .VTTN.T.SYAICTG.EFLE..G...SPWGLWRNHVALA.MIV.FL..AYLKLLFLK.FS
Retrocopy SVTTNSTYSYAICTGKEFLENEGVTFSPWGLWRNHVALARMIVTFLTVAYLKLLFLKHFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_313 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_313 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000011333	1 retrocopy	retro_eeur_320,
Tupaia belangeri	ENSTBEG00000004706	1 retrocopy	retro_tbel_3110,
Tursiops truncatus	ENSTTRG00000015227	1 retrocopy	retro_ttru_313 ,