RetrogeneDB ID: retro_ttru_418

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2211:43876..44767(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF131
• Ensembl ID: ENSTTRG00000009644
• Aliases: None
• Description: zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]

Sequence

>retro_ttru_418
GATTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCAC
TGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGGGAGAGCGCATGGAAACAGCACCTCAATTGTTACCACC
TTGAAGAAGGTGGAGTCAGTAAGAAGCAAAGAACTGGGAAAAACATTCACATATGTCAGTACTATGAGAAACAGTTTGAC
CACTTTAGACATTTTAAAGAGCATCTTCGAAAGCATACAGGTGAAAAACCTTTTGAATGTCCAAATTGTCATGAACGATT
TGCTAGAAATAGCACCCTCAAACGTCACCTGACTGCATGCCAAACTGGAGTGGGGGCAAAAAAGGGAAGAAAGAAGCTTT
ATGAATGTCAGGTCTGTAATAGTGTGTTTAACAGCTGGGACCAGTTCAAAGATCACTTGGTAATACACACTGGAGATAAA
CCCAACCATTGTACTTTGTGTGACTTGTGGTTTATGCAAGGAAATGAATTAAGGAGGCATCTCAGTGATGCTCATAATAT
TTCAGAGCGTCTAGTAACTGAAGAAGTTCTTTCAGTAGAAACACGTGTGCAAACTGAACCTGTGACATCAATGACTATTA
TAGAACAAGTTGGGAAGGTGCACGTGTTACCATTGCTTCAGGTTCAAGTGGATTCGGCACAAGTGACTGTGGAACAGGTC
CACCCAGATCTGCTCCAGGACAGCCAAGTGCACGATTCACATATGAACGAGCTTCCAGAACAGGTCCAGGTAAGTTATCT
AGAAGTGGGCCGAATTCAGACTGAAGAAGGTACCGAAGTACATGTAGAGGAGCTGCATGTTGAATGGGTAAATCAGATGC
CAATGGAAGTA

Alignment

ORF - retro_ttru_418 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.32 %
• Parental protein coverage: 53.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DLFHCEKCNRSFKLFYHFKEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGKKIH
          DLFHCEKCNRSFKLFYHFKEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGK.IH
Retrocopy DLFHCEKCNRSFKLFYHFKEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGKNIH

Parental  ICQYCEKQFDHFGHFKEHLRKHTGEKPFECPNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCN
          ICQY.EKQFDHF.HFKEHLRKHTGEKPFECPNCHERFARNSTLK.HLTACQTGVGAKKGRKKLYECQVCN
Retrocopy ICQYYEKQFDHFRHFKEHLRKHTGEKPFECPNCHERFARNSTLKRHLTACQTGVGAKKGRKKLYECQVCN

Parental  SVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDAHNISERLVTEEVLSVETRVQTEPVTS
          SVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDAHNISERLVTEEVLSVETRVQTEPVTS
Retrocopy SVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDAHNISERLVTEEVLSVETRVQTEPVTS

Parental  MTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVHDSHMNELPEQVQVSYLEVGRIQTEEGTEV
          MTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVHDSHMNELPEQVQVSYLEVGRIQTEEGTEV
Retrocopy MTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVHDSHMNELPEQVQVSYLEVGRIQTEEGTEV

Parental  HVEELHVERVNQMPMEV
          HVEELHVE.VNQMPMEV
Retrocopy HVEELHVEWVNQMPMEV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_418 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_418 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001280	1 retrocopy	retro_cjac_2484,
Cavia porcellus	ENSCPOG00000011858	1 retrocopy	retro_cpor_350,
Gorilla gorilla	ENSGGOG00000002252	1 retrocopy	retro_ggor_2485,
Ictidomys tridecemlineatus	ENSSTOG00000015383	1 retrocopy	retro_itri_1485,
Tursiops truncatus	ENSTTRG00000009644	1 retrocopy	retro_ttru_418 ,