RetrogeneDB ID: retro_ttru_426

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2246:77793..78129(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000021410
• Aliases: None
• Description: None

Sequence

>retro_ttru_426
ATGAGTGGGCATGTCAGAACAAGATCCCAATCTGCAGGAAGAAGAAATGATGGAGAGTCTTCCCAGCCAGTTAGACCTCT
GGTTGCTCAGCAGCTCAGTGATAAACAACCTCAACTAGAAGAACCACAAACTAAGAGTCAGGATATTATACCTGCTTATG
ACATTGAAGATGAAGGAGCATCTGTAGCTCAAAGGGCTGATATGGAAGCTGATCAGTAGAAACTGGTTCTCTTGAAGACT
GTGGATGAGCCTGGAGGTGGTCCTGATGTCAAGAAGGAGATTCTACCAAGTCTAGAGCCTGTTAAAATGCCAGAAGCTGG
TGAAGGACAACCACAG

Alignment

ORF - retro_ttru_426 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGHVRRRSKSAGRR---ESSQVVGPLVAQQPSDKPPQLEEPPSENQDTISAQDIEGEGAPVAQGPAMEA
          MSGHVR.RS.SAGRR...ESSQ.V.PLVAQQ.SDK.PQLEEP....QD.I.A.DIE.EGA.VAQ...MEA
Retrocopy MSGHVRTRSQSAGRRNDGESSQPVRPLVAQQLSDKQPQLEEPQTKSQDIIPAYDIEDEGASVAQRADMEA

Parental  DQQELPLLKTVDEPGDGPDVKEEILPSLEPIKMPEAGEGQPR
          DQ..L.LLKTVDEPG.GPDVK.EILPSLEP.KMPEAGEGQP.
Retrocopy DQ*KLVLLKTVDEPGGGPDVKKEILPSLEPVKMPEAGEGQPQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_426 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_426 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000021410	1 retrocopy	retro_ttru_426 ,
Vicugna pacos	ENSVPAG00000008384	1 retrocopy	retro_vpac_104,