RetrogeneDB ID: retro_ttru_453

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2337:306983..307550(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NKIRAS2
• Ensembl ID: ENSTTRG00000006623
• Aliases: None
• Description: NFKB inhibitor interacting Ras-like 2 [Source:HGNC Symbol;Acc:17898]

Sequence

>retro_ttru_453
ATGGGAAAGGTCTGTAAGGTTGTGGTTTGTGGCTTGTTATCTGTGGGGAAAATGGCGATTTTGGAGTAGCTCCTTTATGG
GAATCATCCTATTAGAATGGAGGACTGTGAAACAATGGAAGATATGTATATGGCTTCAGTGGAAACAGATCGGGGAGTCA
AGGAACAGGTACATCTTTACGACACCAGGGGCCTACAGGAAGGTGTGGAGCTTCCAAAGCATTATTTTTCATTTGCCGGT
GGCTTCGTTTTTGTGTACAGTGTGAATAACTTTGAATCCTTTCAGAGAGTGGAGCTTCTGAAGAAAGAAATTGATCGGTT
CAAAGACAAAAAAGAGGTGGCAATTGTTGTGTTAGGAAACAAAACTGACCTTTCTGAGCAGAGACAAGCGGCCGCCGAAG
TGGCACAGCAGTGGGCCAGGAGCGAGAAGGTGCCTCTGTGGGAGGTGACGGTCACAGACCTCAAGACCCTGATCGAGCCC
TTAACCCTGCTAGCCCGCAAACTCTCCCAGCCCCAGAACAAAGCGAGCTTCCCTCTGCCTGGGAGGAGAAGCAAAGGCAA
CTACAGC

Alignment

ORF - retro_ttru_453 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.49 %
• Parental protein coverage: 98.43 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAE
          MGK.CKVVVCG..SVGK..ILE.LLYGNH....E..ET.ED.Y..S.ETDRGV.EQV..YDTRGL..G.E
Retrocopy MGKVCKVVVCGLLSVGKMAILE*LLYGNHPIRMEDCETMEDMYMASVETDRGVKEQVHLYDTRGLQEGVE

Parental  LPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAK
          LP.H.FS...G.V.VYS....ESFQRVELLKKEID..KDKKEV.IVVLGNK.DL.EQR.....VAQ.WA.
Retrocopy LPKHYFSFAGGFVFVYSVNNFESFQRVELLKKEIDRFKDKKEVAIVVLGNKTDLSEQRQAAAEVAQQWAR

Parental  SEKVKLWEVSVADRRSLLEPFVYLASRMTQPQSKSAFPL-SRKNKGSGS
          SEKV.LWEV.V.D...L.EP...LA....QPQ.K..FPL..R..KG..S
Retrocopy SEKVPLWEVTVTDLKTLIEPLTLLARKLSQPQNKASFPLPGRRSKGNYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_453 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_453 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ictidomys tridecemlineatus	ENSSTOG00000006159	1 retrocopy	retro_itri_958,
Tursiops truncatus	ENSTTRG00000006623	1 retrocopy	retro_ttru_453 ,