RetrogeneDB ID: retro_ttru_459

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2358:94695..95414(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF410
• Ensembl ID: ENSTTRG00000006431
• Aliases: None
• Description: zinc finger protein 410 [Source:HGNC Symbol;Acc:20144]

Sequence

>retro_ttru_459
ATGTTATCAGATGAGTTAGGATTCAAACCAGACCTCCTGTTACAGTTTGTTCAGAATACGTCCATCCCACTGGGACAGGG
ACTAGTAGAATCAGAAGCTAAAGACATTACTTGCTTGTCCCTCCTTCCAGTGACTGAGGCCTCAGAATGAAGTCGGCTAA
TGTTTCCAGATAATACTCTAAATATACTAACTCCTCCAAGGACGTTCCTTACTGAGCTGTGTTGAGAAGCCTTCAGGTGA
ATGTGGGTCCAGACAGAGAAGAGACGAGGGCTCAGATTGTACAGAAGCCTCCGGAGTCTTTGTCCACTCCAGAGTCTCTT
AGCTTGTTGCAAGATCTATAGCCAAGTGATAGCACTTCTTTTATTCTTCTTAACCTACCAAGAGTCTGGGCTCTTCAGCT
GAACACTTCGTGTTTGTACAAGATGAGGCAAAGGATTCAGGGAATGATTTCTTCTCCAGTGAGAGCACAGACAGTAGCAT
TCCATGGATCCTCCGGGTTCAGGAGTTGGCCCATGACAGTTTGATTGCTGCTACTCGTGCACAACCGGCAAAGAATGCGC
AAACCAGCAACAATGGAGAAATGTCCTCCTTGCTTCTGATGATGGGCAACCCCAAGATTCTGGGCCCCTTCCTCAAATGG
AGAAGAAGTTAAGTGTACAGTTGAAGGCTGTGACCAGACATTTGTGTGGCCAGCTCACTTTAAGTACCACCTCAAAACT

Alignment

ORF - retro_ttru_459 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.96 %
• Parental protein coverage: 52.95 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLMLPDDTPN-HTNSSKEV
          MLSDEL..KP.LL.QFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASE.SRLM.PD.T.N..TNSSK.V
Retrocopy MLSDELGFKPDLLLQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASE*SRLMFPDNTLN<YTNSSKDV

Parental  PSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNL-TRAGLGSSAEHL
          P..AVLRSLQVNVGPD.EETRAQ.VQK.PE.LSTPES.SLLQDL.PSDSTSFILLNL.T...LGSSAEH.
Retrocopy PY*AVLRSLQVNVGPDREETRAQIVQKPPESLSTPESLSLLQDL*PSDSTSFILLNL<TKS-LGSSAEHF

Parental  VFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGE-NVHLGSGDGQPK
          VFVQDEA.DSGNDF.SSESTDSSIPW.LRVQELAHDSLIAATRAQ.AKNA.TS.NGE.NV.L.S.DGQP.
Retrocopy VFVQDEAKDSGNDFFSSESTDSSIPWILRVQELAHDSLIAATRAQPAKNAQTSNNGE<NVLLASDDGQPQ

Parental  DSGPLPQMEKKL-KCTVEGCDRTFVWPAHFKYHLKT
          DSGPLPQMEKKL.KCTVEGCD.TFVWPAHFKYHLKT
Retrocopy DSGPLPQMEKKL<KCTVEGCDQTFVWPAHFKYHLKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_459 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_459 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000006431	1 retrocopy	retro_ttru_459 ,