RetrogeneDB ID: retro_ttru_514

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2548:19393..20680(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENAH
• Ensembl ID: ENSTTRG00000014753
• Aliases: None
• Description: enabled homolog (Drosophila) [Source:HGNC Symbol;Acc:18271]

Sequence

>retro_ttru_514
CGTCAGAATTGCCTGGAGCAGGAGAGATAAGAGCGGGAGAGGCTGGAGAGGCTGGACTGGGAAAGGCAAGACAGAGAGCG
GCAAGAGCAGCTAGAAAGGGAGCAACTGGAATGCAAGTGAGCGAAGAATGTCAAATGCCGCTCCATCTTCCAACAGCTCC
CTGTATCGTGCTCCACTTCCTGAGTGTGCCAGTTGCCAGCCTCCTTCAGCACCTCCTCCATCATATGCTAAAGTCATCTC
AGCTCCAGTGTCAGAGGCCACTCCTGATTACGCTGTAGTGACCGCTTTGCCACCTACTTCTACACCCCCTACACCACCAC
TTCGACACTCCAAGACACGTTTTGCAACATCTCTAGGTTCAGCCTTCCACCCTGTTCTTCCCCATTATACTACAGTTCCT
CGTCCTCTGAACAAAAACTCTCGACCTTCTTCTCTTGTGAACACACCCTCTCTTCAACCTCCAGCTACGAAGCCCTGTGC
CTGGTCTACTTCCAATTTCTCGCCCTTCCCTCCGTCTCCTCTCCCACCAACGCAGAGCTACTGGTCCAAAGCCTGTCCTC
CCCAGTTGTGTTTCTTATCCTGTGCCCCAGATGCCTCCATCATCAGCGGCACCCAGCGGGCTGCTCGACTCTGTCACACA
TCCAGTGTCTCTACCAGCCCACCACCGCCTTCCCTCGCACCACTCTCACACTGTGGATGAGAGCTTCTCCTCCTCCAAGC
ACGCCTATTGCCTCAACTCCCTCATCCAAGCCTAGTGTTCTCCCTTCTCCCTCTGCAGCTGCCCCTGCCTCTGTGGAGAC
TCCTCTAAACTCTGTGCTGGGAGCCTCTTCTGAGCCAGGCTTGCAGGCAGTCTCTCAGCTGGCCGAGACTCCAGCCCAAC
AGGGCATTGTCTTGGGACCACCTGAACCTCCACTCCCTCCTGCACTCCCACCAGGTCCTGCCCAGGCATCAGCAGTGCTC
CCTCCTCCCCCAAGGCCTCCTCCACTCTGTCCACTTCTGTCCTCAGGGCCCCCGCCTCTGCTTCCTCCAGCGCCTCTTCC
TAATCAAGTATCCCCTTCTCCCTCATCACCTCCTGCTGCTCCCCTCCCTGCATCTGGATTTTTTTTGGGATCCATGTCTG
TAGACAATCGCCCTTCAACTGGACTTGCAGCTGCAATTGCTGGAGCAAAACTTAGGAAAGTGTCACGGTTGGAGGATGCC
TCTTTCCCAAGTGGAGGGAACACCACTGGTGTGAATTCGGCCTCATCTAAAACAGATAGGGGTCGTGGAAATGGACCCCT
TCCTTTA

Alignment

ORF - retro_ttru_514 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.04 %
• Parental protein coverage: 55.88 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RQDRLERERQERERLERLDRERQERERQEQLEREQLE-WER-ERRMANAAPSSDSSLYHAPLPEYASCQP
          RQ..LE.ER.E.........ERQ...R..Q...E....W...ERRM.NAAPSS.SSLY.APLPE.ASCQP
Retrocopy RQNCLEQER*EXXXXXXXXWERQD--RERQEQLEREQ>WNASERRMSNAAPSSNSSLYRAPLPECASCQP

Parental  PSAPPPSYAKVISAPVSEATPDYAVVTALPPTSTPPTPPLRHPATRFATSLGSAFHPVLPHYATAPRPLN
          PSAPPPSYAKVISAPVSEATPDYAVVTALPPTSTPPTPPLRH..TRFATSLGSAFHPVLPHY.T.PRPLN
Retrocopy PSAPPPSYAKVISAPVSEATPDYAVVTALPPTSTPPTPPLRHSKTRFATSLGSAFHPVLPHYTTVPRPLN

Parental  KNSRPSSPVNTPSPQPPATKPCAWSTSSFSPLPPSPPVMISSPPG-RATGPRPVLPGCVSSPVPQRPPSP
          KNSRPSS.VNTPS.QPPATKPCAW...S.S...P.PP.....PP..RATGP.PVLP.CVS.PVPQ.PPS.
Retrocopy KNSRPSSLVNTPSLQPPATKPCAW---STSNFSPFPPSPL--PPT>RATGPKPVLPSCVSYPVPQMPPSS

Parental  AAPSGLLDSVTCPVSPP-PTSGPAALPPPSLAPLSHCGSQASPPPSTPVASTPSSKPSVLPSPSAAAPAS
          AAPSGLLDSVT.PVS.P.PT....A.P...L..........S.P......S.PS....VLPSPSAAAPAS
Retrocopy AAPSGLLDSVTHPVSLP>PTT---AFPRTTLTLWMRASPPPSTPIASTPSSKPS----VLPSPSAAAPAS

Parental  VETPLTSVLGDSSASEPGLQAASQPAETPAQQGIVLGPPAPPPPPPLPPGPALTSAGLPPPPGPPPPPPL
          VETPL.SVLG....SEPGLQA.SQ.AETPAQQGIVLGPP.PP.PP.LPPGPA..SA.LPPPP.PPP..PL
Retrocopy VETPLNSVLG--ASSEPGLQAVSQLAETPAQQGIVLGPPEPPLPPALPPGPAQASAVLPPPPRPPPLCPL

Parental  PSSGPPPPPPPPPLPNQVPPPPPPPPAPPLPASGFFSGSMSEDNRPLTGLAAAIAGAKLRKVSRVEDASF
          .SSGPPP..PP.PLPNQV.P.P..PPA.PLPASG...GSMS.DNRP.TGLAAAIAGAKLRKVSR.EDASF
Retrocopy LSSGPPPLLPPAPLPNQVSPSPSSPPAAPLPASGXXXGSMSVDNRPSTGLAAAIAGAKLRKVSRLEDASF

Parental  PSGGN-IGVNSASSKTDTGRGNGPLPL
          PSGGN..GVNSASSKTD.GRGNGPLPL
Retrocopy PSGGNTTGVNSASSKTDRGRGNGPLPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_514 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_514 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000014753	1 retrocopy	retro_ttru_514 ,