RetrogeneDB ID:

retro_ttru_55

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1062:32166..32572(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RFXAP
Ensembl ID:ENSTTRG00000007901
Aliases:None
Description:regulatory factor X-associated protein [Source:HGNC Symbol;Acc:9988]


Retrocopy-Parental alignment summary:






>retro_ttru_55
ATGAGCAAGACCTGCACCTACGAGGGCTGCAGCGAGACCACGAGCCAGGTGGCCAAACAGCGCAAGCCGTGGATGTGCAA
GAAACATCGCAACAAGATGTACAAGGATAAGCACAAGAAGAAGAAAAGTGACCAAGCCCTGAACTGCAGTGCGGCCGCCC
AGGCTGGCAGCGCGGGAAACGTCAAACTTGAGGAAAGTGCAGATAATATACTCTCTACTGTTAAACAGAGAACAGGATCT
TTTGGGGATCAACCTGCAAGACCTGCTCTTTCAGAACAAGTGTTAAATCAAAAAAGACTTCTTACTAAGAAGTCCAGAAG
TGGTGCAGTTTTTACAGAAACAGCAACAACTATTATATTAGCAAGTTTTGGAGCAAAGACAACAGCAGTTTCCAGGAACA
TCAGTG

ORF - retro_ttru_55 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.48 %
Parental protein coverage: 56.43 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSDQALNCGGAAQAGSAGNVKLEESADNI
MSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDK.KKKKSDQALNC..AAQAGSAGNVKLEESADNI
RetrocopyMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKHKKKKSDQALNCSAAAQAGSAGNVKLEESADNI
ParentalLSIVKQRKGSFGDRPARPTLLEQVLNQKRLSLLRSPEVVQFLQ-KQQQLLNQQVLEQRQQQFPGTSV
LS.VKQR.GSFGD.PARP.L.EQVLNQKRL....S.....F....QQ.LL..QVLEQRQQQFPGTSV
RetrocopyLSTVKQRTGSFGDQPARPALSEQVLNQKRLLTKKSRSGAVFTE>QQQ-LLY*QVLEQRQQQFPGTSV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_55 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_55 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000125181 retrocopy
Tursiops truncatus ENSTTRG00000007901 2 retrocopies
retro_ttru_220, retro_ttru_55 ,



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