RetrogeneDB ID:

retro_ttru_557

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2676:59864..60514(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C22orf23
Ensembl ID:ENSTTRG00000004815
Aliases:None
Description:chromosome 22 open reading frame 23 [Source:HGNC Symbol;Acc:18589]


Retrocopy-Parental alignment summary:






>retro_ttru_557
ATGGCTTCCCAGGAGAGGATGGAGACAGTGACCAAAGGAACTGGGTTCTGGCGCTGCCCCAAGCCAGCCACTTACATCCC
AGGGACCTGCGAGCTGCTCAGAGTGATGTTGAAGGAATCCAAACTGACAAACTTCCAACAGCGCCACATCATGGACACCA
TGAAACGAGGAGACACTCTCCCCCTACAGTGCAGCCCAACTTCCAGCTAGAGGGTCTTGCCTTCCAAGCCGCCGGCCTCA
GCCATCTGCTTGCCTCCCATCCTGGCTGCCCGGTCCCACCTCCGGACTGCCAGCGTGTGCCAAGACAACGGGGCCTACAG
CCGGGAGCAGCTGAAGCCTCAAACCACCCGAGATGTGGAGAAGGAGAAGCGCAGACTCCGAAATATTTTTGCCACCAGGA
AAGAGCCAGAGGAATGGAAAAGAAAGCCCCTCCTATGCGACAGGAGGGCCCAGCCCCTGAGCTGGACCGGTGTGAAGAAT
TGGTGAAGGAAATCCAGGAGAGGAAAGAATTCCTGGCTGACATGGAGGCCCTAGGGCAGCGCAGACAGTACCGAGGGCTC
ATCCTTACTGAAATCTCCCAGAAACTACAGGAAATGGAAGACCTTGACCACAAGAGGAGTGAGGAACTTAGGAAGGCTCT
TGCCACCACT

ORF - retro_ttru_557 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.32 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMASQERVETVTKGAGFWRCPKPATYTPETCELLRVMMKESKLTNFQRRHIMDTMKRGDTLPLQCSPTSCQ
MASQER.ETVTKG.GFWRCPKPATY.P.TCELLRVM.KESKLTNFQ.RHIMDTMKRGDTLPLQCSPTS..
RetrocopyMASQERMETVTKGTGFWRCPKPATYIPGTCELLRVMLKESKLTNFQQRHIMDTMKRGDTLPLQCSPTSS*
ParentalRVLPSKQPAPAIYLPPILAVRSHLRPASMCQANGAYSRERFKPQATRDLEKEKRRLQNIFATGKEPVERK
RVLPSK.PA.AI.LPPILA.RSHLR.AS.CQ.NGAYSRE..KPQ.TRD.EKEKRRL.NIFAT.KEP.E.K
RetrocopyRVLPSKPPASAICLPPILAARSHLRTASVCQDNGAYSREQLKPQTTRDVEKEKRRLRNIFATRKEPEEWK
ParentalKKP-PPVRQENPAPELDRFEELVKEIQERKEFLADMEALGQGRQYQAIILTEISQKLQEMEDLDHKRSEE
.KP.PP.RQE.PAPELDR.EELVKEIQERKEFLADMEALGQ.RQY...ILTEISQKLQEMEDLDHKRSEE
RetrocopyRKP<PPMRQEGPAPELDRCEELVKEIQERKEFLADMEALGQRRQYRGLILTEISQKLQEMEDLDHKRSEE
ParentalLRKALATT
LRKALATT
RetrocopyLRKALATT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_557 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_557 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000004815 1 retrocopy
retro_ttru_557 ,



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