RetrogeneDB ID: | retro_ttru_611 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_2902:84228..84906(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ZC2HC1A | ||
| Ensembl ID: | ENSTTRG00000000916 | ||
| Aliases: | None | ||
| Description: | zinc finger, C2HC-type containing 1A [Source:HGNC Symbol;Acc:24277] |
Retrocopy-Parental alignment summary:
>retro_ttru_611
AATGGAAGTGTCCAAGTTGGAGAACTGTTACCTTGCAAGATTTGTGGAAGGGCATCCTTTCCAGTGGCATTAAAAAAAAC
ATGGACCTATTTGCCAGAAAACTGCCGCTAAAAAACAGAAGACTTTTGATTCAAACAGACAAAGAGCTGAAGGGACGGAT
ATTCCAACAGTAAAGCCTCTTAAACCCAGGCCTGAACCACCAAAGGAGCCATCTAATTGGAGAAGAAAGCATGAAGAGTT
CATTGCCACCATAAGAGCAGCTAAAGGCCTCGGTCAGGCCCTTAAAGAGGGTGGCAAACTTCCTCCCCTCCTCCACCTTT
TTATGATCCTGATTACATTCAGTGTCCATATTGCCAGAGGAGATTTCATGAAAATGCAGCTGATAGACATATAAATTTCT
GTAAAGAACAGGCAGTGCATATTAGTAATACAGGCAAATTTTCTACTGATACCAAGGGAAACTCGACTTCTCGGACACAG
TGTAAGGCACCTGCACTTAAAAAGTCCAGTTCTCTAACCGCCTCATCAGGATCTTCACGATTACCACAGCCAAGTGGCAC
TAGCAAAACGGTTGTAGGTGTTGCTTCGGGTAAAGTGTCTTCAGTTAGCAGCTCTTTGGGAAACAAACTTCGGACCTTGT
CTTCCTCCCATAAAGGGATAGCAGCCCCTCGCGTAGGT
ORF - retro_ttru_611 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.96 % |
| Parental protein coverage: | 86.69 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | NGSVQVGELLPCRICGRTFFPVALKK-HGPICQKTASKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKK |
| NGSVQVGELLPC.ICGR..FPVA....HGPICQKTA.KK.KTFDS.RQRAEGTDIPTVKPLKPRPEPPK. | |
| Retrocopy | NGSVQVGELLPCKICGRASFPVAXXX>HGPICQKTAAKKQKTFDSNRQRAEGTDIPTVKPLKPRPEPPKE |
| Parental | PSNWRRKHEEFIATIRAAKGLGQALKEGGKLPP-PPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQA |
| PSNWRRKHEEFIATIRAAKGLGQALKEGGKLPP.PPPP.YDPDYIQCPYCQRRF.ENAADRHINFCKEQA | |
| Retrocopy | PSNWRRKHEEFIATIRAAKGLGQALKEGGKLPP<PPPPFYDPDYIQCPYCQRRFHENAADRHINFCKEQA |
| Parental | ARISNKGKFSTDTKGKSTSRTQVYKPPALKKSSSPGATSSGSSRLPQPSGTSKTVVGVPSGKVSSVSSSL |
| ..ISN.GKFSTDTKG.STSRTQ..K.PALKKSSS..A.SSGSSRLPQPSGTSKTVVGV.SGKVSSVSSSL | |
| Retrocopy | VHISNTGKFSTDTKGNSTSRTQC-KAPALKKSSSLTA-SSGSSRLPQPSGTSKTVVGVASGKVSSVSSSL |
| Parental | GSKLQTLSPSHKGIAVPHVG |
| G.KL.TLS.SHKGIA.P.VG | |
| Retrocopy | GNKLRTLSSSHKGIAAPRVG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_611 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_611 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000000916 | 1 retrocopy |
retro_ttru_611 ,
|