RetrogeneDB ID: retro_ttru_648

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2970:186384..186746(-)
• Located in intron of: ENSTTRG00000016494

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C7orf49
• Ensembl ID: ENSTTRG00000008768
• Aliases: None
• Description: chromosome 7 open reading frame 49 [Source:HGNC Symbol;Acc:22432]

Sequence

>retro_ttru_648
AGGAGGAGAAGAGCCACGGCGCCAGTGGCTGCAGCAAGACCTCCTGCCGTGAGGACTGTGTACCGCTGAATGAAGCTGAA
ATCCTGGGCGTTGCTCTGGGAATCCTGATAGAGGGCGGAAAACAGGAAAAGCCGTTGGAACAGCTGCCTCTGGCAGGCCC
TGATAAGCCAGAGCACTCCCCAGGCAGCTCAGCGCCACCGTCCCCGAGGCCCGCCCGGAGCAGAAGTGGGGACAGCGAGG
ACAGCGAGGACGAGGACTGTGGGGAAGACGGCCCTCCTCCGGGGCCTGCGGCTTCTGACGCGGCCTGCAGCAGAGGCCTC
GGGGAGGACCAGGATGCGCTCAAATCCGTCAGAGAGATTTTT

Alignment

ORF - retro_ttru_648 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.39 %
• Parental protein coverage: 95.12 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KRRTATVPVAAARLPAVRTVYC-MNEAEIVDVALGILIEGRKQEKPLEQLPLAGADKPEQSPASSAPPSP
          .RR.AT.PVAAAR.PAVRTVY...NEAEI..VALGILIEG.KQEKPLEQLPLAG.DKPE.SP.SSAPPSP
Retrocopy RRRRATAPVAAARPPAVRTVYR<LNEAEILGVALGILIEGGKQEKPLEQLPLAGPDKPEHSPGSSAPPSP

Parental  SPRGSRSEDSEDEDCGEDGPPLGPAG---SDSACGRN-EEDQDALKYVREIF
          .P..SRS...........G....P.G...SD.AC.R...EDQDALK.VREIF
Retrocopy RPARSRSXXXXXXXXEDCGEDGPPPGPAASDAACSRGLGEDQDALKSVREIF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_648 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_648 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000008768	1 retrocopy	retro_ttru_648 ,