RetrogeneDB ID: | retro_ttru_648 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_2970:186384..186746(-) | ||
| Located in intron of: | ENSTTRG00000016494 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C7orf49 | ||
| Ensembl ID: | ENSTTRG00000008768 | ||
| Aliases: | None | ||
| Description: | chromosome 7 open reading frame 49 [Source:HGNC Symbol;Acc:22432] |
Retrocopy-Parental alignment summary:
>retro_ttru_648
AGGAGGAGAAGAGCCACGGCGCCAGTGGCTGCAGCAAGACCTCCTGCCGTGAGGACTGTGTACCGCTGAATGAAGCTGAA
ATCCTGGGCGTTGCTCTGGGAATCCTGATAGAGGGCGGAAAACAGGAAAAGCCGTTGGAACAGCTGCCTCTGGCAGGCCC
TGATAAGCCAGAGCACTCCCCAGGCAGCTCAGCGCCACCGTCCCCGAGGCCCGCCCGGAGCAGAAGTGGGGACAGCGAGG
ACAGCGAGGACGAGGACTGTGGGGAAGACGGCCCTCCTCCGGGGCCTGCGGCTTCTGACGCGGCCTGCAGCAGAGGCCTC
GGGGAGGACCAGGATGCGCTCAAATCCGTCAGAGAGATTTTT
ORF - retro_ttru_648 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.39 % |
| Parental protein coverage: | 95.12 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KRRTATVPVAAARLPAVRTVYC-MNEAEIVDVALGILIEGRKQEKPLEQLPLAGADKPEQSPASSAPPSP |
| .RR.AT.PVAAAR.PAVRTVY...NEAEI..VALGILIEG.KQEKPLEQLPLAG.DKPE.SP.SSAPPSP | |
| Retrocopy | RRRRATAPVAAARPPAVRTVYR<LNEAEILGVALGILIEGGKQEKPLEQLPLAGPDKPEHSPGSSAPPSP |
| Parental | SPRGSRSEDSEDEDCGEDGPPLGPAG---SDSACGRN-EEDQDALKYVREIF |
| .P..SRS...........G....P.G...SD.AC.R...EDQDALK.VREIF | |
| Retrocopy | RPARSRSXXXXXXXXEDCGEDGPPPGPAASDAACSRGLGEDQDALKSVREIF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_648 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_648 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000008768 | 1 retrocopy |
retro_ttru_648 ,
|