RetrogeneDB ID: retro_ttru_73

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1124:169118..169590(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C11orf57
• Ensembl ID: ENSTTRG00000010518
• Aliases: None
• Description: chromosome 11 open reading frame 57 [Source:HGNC Symbol;Acc:25569]

Sequence

>retro_ttru_73
ATGTCCTGAGTTCCCTTGGGGACGGTCCTCCTGAGGAACGTCATCCAGCACATAGATGCTCACAATAAGACTCAGGAGGA
ATCAGATATGTGGAAAATAAGAGAACTGGAGAAACAGATGGAAGATGCGTACCGGGGGACCAAAAGGAAAATGTTACCCA
GCAGTTCAAGCCGGATGCGTAGTGATGGTTTTGATGAAGAAAGTCAAAGGAGACTATTGGAGGCCAAAGAATGAAACTTC
TGGGGCACTGGATGATGATTTTCTTAAGCCTAAATCCTGGAACAAGAAGTTACATGATTATGAAGCTAACATGCCAGACA
GATGGGGTTACAGTGGATATAAGGTGTTATACCCTGAAGAATTTGAAACAGTAGTGATCAGCAAGATATTACCAATGGGA
AAAAAACATCTCCCCAGGTAAAAATCATCTACCCATGAATCTCACAAACACAAGAAGTCAAAGAAATCTCAC

Alignment

ORF - retro_ttru_73 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.2 %
• Parental protein coverage: 53.61 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSRVPLGKVLLRNVIRHTDAHNKIQEESDMWKIRELEKQMEDAYRGAKRKMLPSSSSRMRSDGFDEESQR
          MS.VPLG.VLLRNVI.H.DAHNK.QEESDMWKIRELEKQMEDAYRG.KRKMLPSSSSRMRSDGFDEESQR
Retrocopy MS*VPLGTVLLRNVIQHIDAHNKTQEESDMWKIRELEKQMEDAYRGTKRKMLPSSSSRMRSDGFDEESQR

Parental  -DYWRPKNEISGALDDDFLKAKSWNKKLHDYEANMPDRW-HSGYKELY-EEFET-DSSDQQDITNGKKTS
          .DYWRPKNE.SGALDDDFLK.KSWNKKLHDYEANMPDRW..SGYK.LY.EEFET..S..Q.DITNGKKTS
Retrocopy >DYWRPKNETSGALDDDFLKPKSWNKKLHDYEANMPDRWGYSGYKVLYPEEFET<SSDQQ-DITNGKKTS

Parental  PQV-KSSTHESHKHKKSKKSH
          PQV.KSSTHESHKHKKSKKSH
Retrocopy PQV>KSSTHESHKHKKSKKSH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_73 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_73 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001999	1 retrocopy	retro_btau_1726,
Cavia porcellus	ENSCPOG00000011060	1 retrocopy	retro_cpor_1008,
Monodelphis domestica	ENSMODG00000014393	1 retrocopy	retro_mdom_351,
Tursiops truncatus	ENSTTRG00000010518	1 retrocopy	retro_ttru_73 ,