RetrogeneDB ID: retro_ttru_764

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3327:264465..265080(-)
• Located in intron of: ENSTTRG00000014612

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: THAP7
• Ensembl ID: ENSTTRG00000009187
• Aliases: None
• Description: THAP domain containing 7 [Source:HGNC Symbol;Acc:23190]

Sequence

>retro_ttru_764
CACTGCTCCGTGCAGGGAAGTGTATGTGGGACACATGCGAGACGTGCAACCGTGGCATCTCCTTCCACAGGCTTCCCAAG
AAGGACAACCAGAGGCGAGGCTTGTGGCTGGCCAACTACCAGCGCCTGGACCCCAGTGGCCAGGGCCTGTGGGACCCGGC
ACCCGAATACATCTGCTTCAAACACTTTGAGGAGAACTGCTTTGAACTGGTGGGAATCAGTGGGTATCACAGGCTGAAGG
AGGGAGCAGTTCCCACAATATCTGAGTGCTTCTCCAAGTTCCGCCCAACGACCAGGAGCCAGGGGCACAGTTACCCACTT
GGACCTCCTAAAGTCAGCCAGCTCCGCCACGCAGTAAGCACTGCTCTGAGGGCTAAGGGCCCACAATGCCAACTTCTCCG
CCTCCACCTCCTGACGTCACCTGCCTTCCGGCGGAAGAGGCGTCAGCCGCTGCCGCTTTGCCTACCTCCCCCACTGAGAG
GCTGGAGGCTCGCCTCAGTAGCGCTTCTCAGACCTCTTGGGTCCCGTGGGCGCCCAGGCAGATGAAGCGGGCCGCAGCAC
TGATCCGGCACCCAAGCGGGAACCGGCAGCCGTCGCCTCTGGAGCCGAGGACCGC

Alignment

ORF - retro_ttru_764 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.04 %
• Parental protein coverage: 66.24 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  HCSA-AGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEYIYFCSKHFEENC
          HCS..AG.C..DT.ET.NRGISFHRLPKKDN.RRGLWLAN.QRLDPSGQGLWDPA.EYI..C.KHFEENC
Retrocopy HCSV<AGKCMWDTCETCNRGISFHRLPKKDNQRRGLWLANYQRLDPSGQGLWDPAPEYI--CFKHFEENC

Parental  FELVGISGYHRLKEGAVPTIFESFSKLR-RTKTKGHSYP-PSPDVSRLQRC-RKRCSEGRGPTTPFCPPP
          FELVGISGYHRLKEGAVPTI.E.FSK.R..T...GHSYP...P.VS.L.....K.CSEG.GPT.P..PPP
Retrocopy FELVGISGYHRLKEGAVPTISECFSKFRPTTRSQGHSYPLGPPKVSQLRHA<SKHCSEG*GPTMPTSPPP

Parental  PADITCFPVEEASAPAALPASPTGRLEPGLSSP-FSDLLGPLGAQADEAGCSTQPSPEREPERQPSPLEP
          P.D.TC.P.EEASA.AALP.SPT.RLE..LSS..FSDLLGP.GAQADEAG.ST.P.P.REP....S..E.
Retrocopy PPDVTCLPAEEASAAAALPTSPTERLEARLSSA<FSDLLGPVGAQADEAGRSTDPAPKREPAAVASGAED

Parental  R
          R
Retrocopy R

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_764 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_764 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000009187	1 retrocopy	retro_ttru_764 ,