RetrogeneDB ID: | retro_ttru_764 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_3327:264465..265080(-) | ||
| Located in intron of: | ENSTTRG00000014612 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | THAP7 | ||
| Ensembl ID: | ENSTTRG00000009187 | ||
| Aliases: | None | ||
| Description: | THAP domain containing 7 [Source:HGNC Symbol;Acc:23190] |
Retrocopy-Parental alignment summary:
>retro_ttru_764
CACTGCTCCGTGCAGGGAAGTGTATGTGGGACACATGCGAGACGTGCAACCGTGGCATCTCCTTCCACAGGCTTCCCAAG
AAGGACAACCAGAGGCGAGGCTTGTGGCTGGCCAACTACCAGCGCCTGGACCCCAGTGGCCAGGGCCTGTGGGACCCGGC
ACCCGAATACATCTGCTTCAAACACTTTGAGGAGAACTGCTTTGAACTGGTGGGAATCAGTGGGTATCACAGGCTGAAGG
AGGGAGCAGTTCCCACAATATCTGAGTGCTTCTCCAAGTTCCGCCCAACGACCAGGAGCCAGGGGCACAGTTACCCACTT
GGACCTCCTAAAGTCAGCCAGCTCCGCCACGCAGTAAGCACTGCTCTGAGGGCTAAGGGCCCACAATGCCAACTTCTCCG
CCTCCACCTCCTGACGTCACCTGCCTTCCGGCGGAAGAGGCGTCAGCCGCTGCCGCTTTGCCTACCTCCCCCACTGAGAG
GCTGGAGGCTCGCCTCAGTAGCGCTTCTCAGACCTCTTGGGTCCCGTGGGCGCCCAGGCAGATGAAGCGGGCCGCAGCAC
TGATCCGGCACCCAAGCGGGAACCGGCAGCCGTCGCCTCTGGAGCCGAGGACCGC
ORF - retro_ttru_764 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.04 % |
| Parental protein coverage: | 66.24 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | HCSA-AGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEYIYFCSKHFEENC |
| HCS..AG.C..DT.ET.NRGISFHRLPKKDN.RRGLWLAN.QRLDPSGQGLWDPA.EYI..C.KHFEENC | |
| Retrocopy | HCSV<AGKCMWDTCETCNRGISFHRLPKKDNQRRGLWLANYQRLDPSGQGLWDPAPEYI--CFKHFEENC |
| Parental | FELVGISGYHRLKEGAVPTIFESFSKLR-RTKTKGHSYP-PSPDVSRLQRC-RKRCSEGRGPTTPFCPPP |
| FELVGISGYHRLKEGAVPTI.E.FSK.R..T...GHSYP...P.VS.L.....K.CSEG.GPT.P..PPP | |
| Retrocopy | FELVGISGYHRLKEGAVPTISECFSKFRPTTRSQGHSYPLGPPKVSQLRHA<SKHCSEG*GPTMPTSPPP |
| Parental | PADITCFPVEEASAPAALPASPTGRLEPGLSSP-FSDLLGPLGAQADEAGCSTQPSPEREPERQPSPLEP |
| P.D.TC.P.EEASA.AALP.SPT.RLE..LSS..FSDLLGP.GAQADEAG.ST.P.P.REP....S..E. | |
| Retrocopy | PPDVTCLPAEEASAAAALPTSPTERLEARLSSA<FSDLLGPVGAQADEAGRSTDPAPKREPAAVASGAED |
| Parental | R |
| R | |
| Retrocopy | R |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_764 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_764 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000009187 | 1 retrocopy |
retro_ttru_764 ,
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