RetrogeneDB ID: retro_ttru_769

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3350:149889..150281(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000003543
• Aliases: None
• Description: None

Sequence

>retro_ttru_769
GAAGAGTCGCTCTCGCTGAAGAACTGGAGCTGCAGCTCTCACCGCTTCCCCAGGACCCAGGACCTGAGGCAGCGGCAGGT
GTGGGAGCGCCCTGTGGCCTTGGAGGCAGAGTTAGACCTGACGCTGAAGGTCCTGGGTGCTGTGGCAGACTCGTCCTCGG
GGGTCATCCTGGACCAGCCGCTGCACATGCTGCGCCACATCCACTCCGAGCTTCAGGCTTGCATCCCGGCTCGGCCCACA
GCAGAATCCCAGCCCCGGGCCGCCTCCACCACTGGCTGTGCCGGCTCCAGGAGGCCACAAAGGAGGAGTCCCAAGGCTGT
CTCGACGCCTCTGTCACATTCAACCTCTTCTGCCTCCTCATAAGGGATCTGAGAATTGTTGCCAGTGGAGAC

Alignment

ORF - retro_ttru_769 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.48 %
• Parental protein coverage: 97.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EESLLQKDWNCSSRLFPRTRDLRQLQVWERPVALEAELALTLNVLEATANSSLDHILDQPLHTLHHIHSK
          EESL..K.W.CSS..FPRT.DLRQ.QVWERPVALEAEL.LTL.VL.A.A.SS...ILDQPLH.L.HIHS.
Retrocopy EESLSLKNWSCSSHRFPRTQDLRQRQVWERPVALEAELDLTLKVLGAVADSSSGVILDQPLHMLRHIHSE

Parental  LQACVPARPTAGPRPR-GRLHHWLRRLQEAPKKESRDCLEASVVFNLFRLLTRDLKCVASGD
          LQAC.PARPTA...PR.GRLHHWL.RLQEA.K.ES..CL.ASV.FNLF.LL.RDL..VASGD
Retrocopy LQACIPARPTAESQPR<GRLHHWLCRLQEATKEESQGCLDASVTFNLFCLLIRDLRIVASGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_769 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_769 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000025607	1 retrocopy	retro_mluc_2004,
Monodelphis domestica	ENSMODG00000023790	1 retrocopy	retro_mdom_1793,
Tursiops truncatus	ENSTTRG00000003543	1 retrocopy	retro_ttru_769 ,