RetrogeneDB ID: | retro_ttru_776 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3390:17012..17636(+) | ||
Located in intron of: | ENSTTRG00000008485 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC2 | ||
Ensembl ID: | ENSTTRG00000000371 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] |
Percent Identity: | 65.24 % |
Parental protein coverage: | 63.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EKWNTDNTLGTEIAIEDQICQGLKLTF-DTTFSPNTGKKS-GKIKSSYKRE-CMNLGCDVDFDFAGPAIH |
EKWNTDNTLGTEI..EDQ...GL.LTF.D..FSPNTG.....KIK..YKRE...NLGCDVDFD.AGP... | |
Retrocopy | EKWNTDNTLGTEITVEDQLARGLTLTF>DSSFSPNTGXXX>AKIKTGYKRE>IVNLGCDVDFDIAGPSAR |
Parental | GSAVFCYE-GWLAGYQMTFDSAKSKLTRNNFAVGYRT--GDFQLHTNVNDGTEFGGSIYQKVCEDLDTSV |
.........GWLA.YQM.F...KS.....NFAVGY.T....FQLHTNVNDGTEFGGSIYQKV...L.T.V | |
Retrocopy | VLSCWVMRAGWLADYQMNFETTKS*VIQSNFAVGYKTDESEFQLHTNVNDGTEFGGSIYQKVNRKLETAV |
Parental | NLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLG |
NLAWT.G...TRFGIAAKYQ..P.A..SAKVNNSS.IG..YTQTL.PG.KLTLS.L.DG....AGGH.LG | |
Retrocopy | NLAWTAGNSNTRFGIAAKYQINPDACFSAKVNNSSPIGLEYTQTLKPGIKLTLSVLLDGRNVSAGGHRLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000012995 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017815 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013505 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001946 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000004764 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000371 | 3 retrocopies |
retro_ttru_116, retro_ttru_1172, retro_ttru_776 ,
|
Tursiops truncatus | ENSTTRG00000009681 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016856 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008068 | 1 retrocopy |